Evidence map›Paper›PMID 31109305›Full record

ArticleBMC genomics2019

Transcriptional reference map of hormone responses in wheat spikes.

Peng-Fei Qi, Yun-Feng Jiang, Zhen-Ru Guo, Qing Chen, Thérèse Ouellet, Lu-Juan Zong, Zhen-Zhen Wei, Yan Wang, Ya-Zhou Zhang, Bin-Jie Xu and 9 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 32 citations in OpenAlex.

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  11. A review on transcriptomic and metabolomic responses of plants to nanopollution.Environmental science and pollution research international · 2022
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  14. Major Facilitator Superfamily Transporter GeneInternational journal of molecular sciences · 2021
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  15. Article
  16. Transcript Dynamics in Wounded and Inoculated Scots Pine.International journal of molecular sciences · 2021
    Article
  17. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 2 countries.

Peng-Fei QiState Key Laboratory of Crop Genetics of Disease Resistance and Disease Control, Chengdu, 611130, Sichuan, China. pengfeiqi@hotmail.com.ORCID http://orcid.org/0000-0002-7772-9591
Yun-Feng JiangTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Zhen-Ru GuoTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Qing ChenTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Thérèse OuelletOttawa Research and Development Centre, Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, ON, K1A 0C6, Canada.
Lu-Juan ZongTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Zhen-Zhen WeiTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Yan WangTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Ya-Zhou ZhangTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Bin-Jie XuTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Li KongTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Mei DengTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Ji-Rui WangState Key Laboratory of Crop Genetics of Disease Resistance and Disease Control, Chengdu, 611130, Sichuan, China.
Guo-Yue ChenState Key Laboratory of Crop Genetics of Disease Resistance and Disease Control, Chengdu, 611130, Sichuan, China.
Qian-Tao JiangTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Xiu-Jin LanTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Wei LiTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Yu-Ming WeiTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
You-Liang ZhengTriticeae Research Institute, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China. ylzheng@sicau.edu.cn.
Sichuan Agricultural University · CNAgriculture and Agri-Food Canada · CA

Funding

National Natural Science Foundation of China 31230053
6 · The paper itself

Abstract

backgroundPhytohormones are key regulators of plant growth, development, and signalling networks involved in responses to diverse biotic and abiotic stresses. Transcriptional reference maps of hormone responses have been reported for several model plant species such as Arabidopsis thaliana, Oryza sativa, and Brachypodium distachyon. However, because of species differences and the complexity of the wheat genome, these transcriptome data are not appropriate reference material for wheat studies.

resultsWe comprehensively analysed the transcriptomic responses in wheat spikes to seven phytohormones, including indole acetic acid (IAA), gibberellic acid (GA), abscisic acid (ABA), ethylene (ET), cytokinin (CK), salicylic acid (SA), and methyl jasmonic acid (MeJA). A total of 3386 genes were differentially expressed at 24 h after the hormone treatments. Furthermore, 22.7% of these genes exhibited overlapping transcriptional responses for at least two hormones, implying there is crosstalk among phytohormones. We subsequently identified genes with expression levels that were significantly and differentially induced by a specific phytohormone (i.e., hormone-specific responses). The data for these hormone-responsive genes were then compared with the transcriptome data for wheat spikes exposed to biotic (Fusarium head blight) and abiotic (water deficit) stresses.

conclusionOur data were used to develop a transcriptional reference map of hormone responses in wheat spikes.

Indexed as

TranscriptomeDehydrationFlowersFusariumPlant DiseasesPlant Growth RegulatorsTriticumPlant Growth RegulatorsDefence mechanismFusarium head blightMarker genePhytohormoneResistanceTranscriptomeWater deficit

Identifiers

PMID31109305
PMCPMC6528200
OpenAlexW2947337567

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.