Evidence map›Paper›PMID 31106902›Full record

ArticleMagnetic resonance in medicine2019

Highly accelerated multishot echo planar imaging through synergistic machine learning and joint reconstruction.

Berkin Bilgic, Itthi Chatnuntawech, Mary Kate Manhard, Qiyuan Tian, Congyu Liao, Siddharth S Iyer, Stephen F Cauley, Susie Y Huang, Jonathan R Polimeni, Lawrence L Wald and 1 more

Abstract read
In one paragraph

Article in Magnetic resonance in medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

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  13. Deep Learning and Its Application to Function Approximation for MR in Medicine: An Overview.Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine · 2022
    Review
  14. Emerging Techniques and Future Directions: Fast and Portable Magnetic Resonance Imaging.Magnetic resonance imaging clinics of North America · 2022
    Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Berkin BilgicAthinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.ORCID 0000-0002-9080-7865
Itthi ChatnuntawechNational Nanotechnology Center, National Science and Technology Development Agency, Pathum Thani, Thailand.
Mary Kate ManhardAthinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.
Qiyuan TianAthinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.
Congyu LiaoAthinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.ORCID 0000-0003-2270-276X
Siddharth S IyerAthinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.ORCID 0000-0002-6432-0850
Stephen F CauleyAthinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.
Susie Y HuangAthinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.
Jonathan R PolimeniAthinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.
Lawrence L WaldAthinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.
Kawin SetsompopAthinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts.

Funding

CONNECTOME 2.0: DEVELOPING THE NEXT GENERATION HUMAN MRI SCANNER FOR BRIDGING STUDIES OF THE MICRO-, MESO- AND MACRO-CONNECTOMEU01EB026996 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI BASSER, PETER J., HUANG, SUSIE YI · 2018 to 2022
$14.2M
MRI CORTICOGRAPHY: DEVELOPING NEXT GENERATION MICROSCALE HUMAN CORTEX MRI SCANNERU01EB025162 · NIBIB · UNIVERSITY OF CALIFORNIA BERKELEY · PI FEINBERG, DAVID ALAN, LIU, CHUNLEI · 2017 to 2021
$13.4M
Project 4P41EB015896 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI ROSEN, BRUCE R · 2012 to 2018
$9.8M
Advanced Fetal ImagingR01EB017337 · NIBIB · BOSTON CHILDREN'S HOSPITAL · PI ADALSTEINSSON, ELFAR, GRANT, PATRICIA ELLEN · 2014 to 2018
$6.2M
Next generation in-vivo diffusion imaging at submillimeter resolutionR01MH116173 · NIMH · STANFORD UNIVERSITY · PI Yogesh Rathi, Kawin Setsompop · 2018 to 2026
$6.2M
fMRI Technologies for Imaging at the Limit of Biological Spatiotemporal Resolution: Administrative SupplementR01EB019437 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI POLIMENI, JONATHAN RIZZO, SETSOMPOP, KAWIN · 2015 to 2024
$5.5M
Improving Human fMRI through Modeling and Imaging Microvascular Dynamics: Administrative SupplementR01MH111419 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI POLIMENI, JONATHAN RIZZO · 2016 to 2020
$4.9M
Rapid MRI acquisition for pediatric low-grade gliomasR01EB020613 · NIBIB · STANFORD UNIVERSITY · PI SETSOMPOP, KAWIN · 2016 to 2019
$2.5M
A Storage Area Network for Structural and Functional Image AnalysisS10RR023401 · NCRR · MASSACHUSETTS GENERAL HOSPITAL · PI FISCHL, BRUCE · 2009 to 2009
$2.0M
SILICON GRAPHICS PRISM EXTREME 128P/1TBS10RR023043 · NCRR · MASSACHUSETTS GENERAL HOSPITAL · PI SORENSEN, ALMA GREGORY · 2006 to 2006
$1.5M
MRI Corticography (MRCoG): Micro-scale Human Cortical ImagingR24MH106096 · NIMH · UNIVERSITY OF CALIFORNIA BERKELEY · PI FEINBERG, DAVID ALAN, LIU, CHUNLEI · 2014 to 2016
$1.4M
Characterizing axonal damage in multiple sclerosis using TractCaliber MRIK23NS096056 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI HUANG, SUSIE YI · 2016 to 2020
$877k
NCRR NIH HHS S10 RR023043NCRR NIH HHS S10 RR023401NIBIB NIH HHS F32 EB026304NIBIB NIH HHS P41 EB015896NIBIB NIH HHS R01 EB017337NIBIB NIH HHS R01 EB019437NIBIB NIH HHS R01 EB020613NIBIB NIH HHS U01 EB025162NIBIB NIH HHS U01 EB026996NIMH NIH HHS R01 MH111419NIMH NIH HHS R01 MH116173NIMH NIH HHS R24 MH106096NINDS NIH HHS K23 NS096056
6 · The paper itself

Abstract

purposeTo introduce a combined machine learning (ML)- and physics-based image reconstruction framework that enables navigator-free, highly accelerated multishot echo planar imaging (msEPI) and demonstrate its application in high-resolution structural and diffusion imaging.

methodsSingle-shot EPI is an efficient encoding technique, but does not lend itself well to high-resolution imaging because of severe distortion artifacts and blurring. Although msEPI can mitigate these artifacts, high-quality msEPI has been elusive because of phase mismatch arising from shot-to-shot variations which preclude the combination of the multiple-shot data into a single image. We utilize deep learning to obtain an interim image with minimal artifacts, which permits estimation of image phase variations attributed to shot-to-shot changes. These variations are then included in a joint virtual coil sensitivity encoding (JVC-SENSE) reconstruction to utilize data from all shots and improve upon the ML solution.

resultsOur combined ML + physics approach enabled R

conclusionCombination of ML and JVC-SENSE enabled navigator-free msEPI at higher accelerations than previously possible while using fewer shots, with reduced vulnerability to poor generalizability and poor acceptance of end-to-end ML approaches.

Indexed as

Machine LearningAlgorithmsBrainEcho-Planar ImagingHumansImage Processing, Computer-Assistedconvolutional neural networkdeep learningjoint reconstructionmachine learningmultishot EPIparallel imaging

Identifiers

PMID31106902
PMCPMC6626584

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.