Evidence map›Paper›PMID 31106331›Full record

ArticleNucleic acids research2019

Structures of maintenance of carboxysome distribution Walker-box McdA and McdB adaptor homologs.

Maria A Schumacher, Max Henderson, Hengshan Zhang

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Maria A SchumacherDepartment of Biochemistry, Duke University School of Medicine, Durham, NC 27710, USA.
Max HendersonDepartment of Biochemistry, Duke University School of Medicine, Durham, NC 27710, USA.
Hengshan ZhangDepartment of Biochemistry, Duke University School of Medicine, Durham, NC 27710, USA.
Duke University · US

Funding

Deciphering fundamental biological processes involving protein-nucleic acid interactions at the molecular levelR35GM130290 · NIGMS · DUKE UNIVERSITY · PI Maria Schumacher · 2019 to 2026
$4.9M
Assembly and partition mechanism of Walker-box based segregation machineryR01GM115563 · NIGMS · DUKE UNIVERSITY · PI SCHUMACHER, MARIA · 2015 to 2018
$1.2M
Structural studies on the Initiator protein, IBP39.R01GM068453 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SCHUMACHER, MARIA · 2004 to 2008
$1.2M
Structural studies on the P1 plasmid partition apparatus.R01GM074815 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SCHUMACHER, MARIA · 2006 to 2009
$720k
NIGMS NIH HHS R01 GM068453NIGMS NIH HHS R01 GM074815NIGMS NIH HHS R01 GM115563NIGMS NIH HHS R35 GM130290
6 · The paper itself

Abstract

Carboxysomes, protein-coated organelles in cyanobacteria, are important in global carbon fixation. However, these organelles are present at low copy in each cell and hence must be segregated to ensure transmission from one generation to the next. Recent studies revealed that a DNA partition-like ParA-ParB system mediates carboxysome maintenance, called McdA-McdB. Here, we describe the first McdA and McdB homolog structures. McdA is similar to partition ParA Walker-box proteins, but lacks the P-loop signature lysine involved in ATP binding. Strikingly, a McdA-ATP structure shows that a lysine distant from the P-loop and conserved in McdA homologs, enables ATP-dependent nucleotide sandwich dimer formation. Similar to partition ParA proteins this ATP-bound form binds nonspecific-DNA. McdB, which we show directly binds McdA, harbors a unique fold and appears to form higher-order oligomers like partition ParB proteins. Thus, our data reveal a new signature motif that enables McdA dimer formation and indicates that, similar to DNA segregation, carboxysome maintenance systems employ Walker-box proteins as DNA-binding motors while McdB proteins form higher order oligomers, which could function as adaptors to link carboxysomes and provide for stable transport by the McdA proteins.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateAmino Acid MotifsBacterial ProteinsCarbon CycleCrystallography, X-RayCyanobacteriaCyanotheceDimerizationDNA, BacterialDNA-Binding ProteinsEscherichia coliGlutaralOrganellesProtein BindingProtein FoldingAdenosine TriphosphatasesAdenosine TriphosphateBacterial Proteinschromosome partition proteins, bacterialDNA, BacterialDNA-Binding ProteinsGlutaral

Identifiers

PMID31106331
PMCPMC6582323
OpenAlexW2941334306

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.