Evidence map›Paper›PMID 31104845›Full record

ArticleCell2019

Identification of a DNA N6-Adenine Methyltransferase Complex and Its Impact on Chromatin Organization.

Leslie Y Beh, Galia T Debelouchina, Derek M Clay, Robert E Thompson, Kelsi A Lindblad, Elizabeth R Hutton, John R Bracht, Robert P Sebra, Tom W Muir, Laura F Landweber

Abstract read
In one paragraph

Article in Cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed.

  1. Article
  2. Article
  3. A distinct subclade of AlkB family demethylases in ciliates safeguards the positional fidelity of eukaryotic NProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. A PIWI protein-dependent DNA N6-adenine methylation pathway inbioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Dual modes of DNA NProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  19. Article
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Leslie Y BehDepartments of Biochemistry & Molecular Biophysics and Biological Sciences, Columbia University, New York, NY 10032, USA; Department of Chemistry, Princeton University, Princeton, NJ 08544, USA; Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA.
Galia T DebelouchinaDepartment of Chemistry, Princeton University, Princeton, NJ 08544, USA.
Derek M ClayDepartments of Biochemistry & Molecular Biophysics and Biological Sciences, Columbia University, New York, NY 10032, USA.
Robert E ThompsonDepartment of Chemistry, Princeton University, Princeton, NJ 08544, USA.
Kelsi A LindbladDepartments of Biochemistry & Molecular Biophysics and Biological Sciences, Columbia University, New York, NY 10032, USA.
Elizabeth R HuttonDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA.
John R BrachtDepartment of Biology, American University, Washington, DC 20016, USA.
Robert P SebraIcahn Institute and Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Tom W MuirDepartment of Chemistry, Princeton University, Princeton, NJ 08544, USA. Electronic address: muir@princeton.edu.
Laura F LandweberDepartments of Biochemistry & Molecular Biophysics and Biological Sciences, Columbia University, New York, NY 10032, USA. Electronic address: laura.landweber@columbia.edu.

Funding

Understanding Complex Genome Editing and RNA Biology in OxytrichaR35GM122555 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LAURA F LANDWEBER · 2017 to 2026
$7.9M
UNDERSTANDING COMPLEX GENE EDITING SYSTEMS IN PROTISTSR01GM059708 · NIGMS · PRINCETON UNIVERSITY · PI LANDWEBER, LAURA F · 1999 to 2016
$4.4M
RNA-guided Genome Rearrangement: Experiments Coupled with Discrete ModelsR01GM109459 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI JONOSKA, NATASHA · 2013 to 2017
$2.0M
Development and Applications of 'Designer Chromatin'R01GM107047 · NIGMS · PRINCETON UNIVERSITY · PI MUIR, TOM · 2013 to 2016
$1.2M
NIGMS NIH HHS R01 GM059708NIGMS NIH HHS R01 GM107047NIGMS NIH HHS R01 GM109459NIGMS NIH HHS R35 GM122555
6 · The paper itself

Abstract

DNA N6-adenine methylation (6mA) has recently been described in diverse eukaryotes, spanning unicellular organisms to metazoa. Here, we report a DNA 6mA methyltransferase complex in ciliates, termed MTA1c. It consists of two MT-A70 proteins and two homeobox-like DNA-binding proteins and specifically methylates dsDNA. Disruption of the catalytic subunit, MTA1, in the ciliate Oxytricha leads to genome-wide loss of 6mA and abolishment of the consensus ApT dimethylated motif. Mutants fail to complete the sexual cycle, which normally coincides with peak MTA1 expression. We investigate the impact of 6mA on nucleosome occupancy in vitro by reconstructing complete, full-length Oxytricha chromosomes harboring 6mA in native or ectopic positions. We show that 6mA directly disfavors nucleosomes in vitro in a local, quantitative manner, independent of DNA sequence. Furthermore, the chromatin remodeler ACF can overcome this effect. Our study identifies a diverged DNA N6-adenine methyltransferase and defines the role of 6mA in chromatin organization.

Indexed as

Multienzyme ComplexesNucleosomesOxytrichaProtozoan ProteinsSite-Specific DNA-Methyltransferase (Adenine-Specific)Tetrahymena thermophilaMultienzyme ComplexesNucleosomesProtozoan ProteinsSite-Specific DNA-Methyltransferase (Adenine-Specific)chromatin remodelingDNA methylationN6-methyladeninenucleosome positioningsynthetic chromosomes

Identifiers

PMID31104845
PMCPMC6570567

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.