Evidence map›Paper›PMID 31104286›Full record

ArticleCerebellum (London, England)2019

Increased Diagnostic Yield of Spastic Paraplegia with or Without Cerebellar Ataxia Through Whole-Genome Sequencing.

Aryun Kim, Kishore R Kumar, Ryan L Davis, Amali C Mallawaarachchi, Velimir Gayevskiy, Andre E Minoche, Zachary Walls, Han-Joon Kim, Mihee Jang, Mark J Cowley and 4 more

Abstract read
PubMed Publisher
In one paragraph

Article in Cerebellum (London, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Movement disorders in hereditary spastic paraplegia (HSP): a systematic review and individual participant data meta-analysis.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2023
    Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Hereditary Ataxias in Argentina.Cerebellum (London, England) · 2025
    Review
  7. Article
  8. Article
  9. Genetic Testing of Movements Disorders: A Review of Clinical Utility.Tremor and other hyperkinetic movements (New York, N.Y.) · 2024
    Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. A Case ofJournal of clinical neurology (Seoul, Korea) · 2021
    Article
  16. Article
  17. Review
  18. Observational
  19. A NovelFrontiers in genetics · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 3 countries.

Aryun KimDepartment of Neurology, Chungbuk National University Hospital, Cheongju-si, South Korea.
Kishore R KumarKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, NSW, Australia. kkum4618@uni.sydney.edu.au.ORCID http://orcid.org/0000-0003-3482-6962
Ryan L DavisKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, NSW, Australia.
Amali C MallawaarachchiDivision of Genomics and Epigenetics, Garvan Institute of Medical Research, Sydney, NSW, Australia.
Velimir GayevskiyKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, NSW, Australia.
Andre E MinocheKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, NSW, Australia.
Zachary WallsKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, NSW, Australia.
Han-Joon KimDepartment of Neurology, Movement Disorder Center, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, South Korea.
Mihee JangDepartment of Neurology, Presbyterian Medical Center, Jeonju, South Korea.
Mark J CowleyKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, NSW, Australia.
Ji-Hyun ChoiDepartment of Neurology, Movement Disorder Center, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, South Korea.
Chaewon ShinDepartment of Neurology, Kyung Hee University Medical Center, Seoul, South Korea.
Carolyn M SueDepartment of Neurogenetics, Kolling Institute, University of Sydney Faculty of Medicine and Health Northern Clinical School and Royal North Shore Hospital, St Leonards, NSW, Australia.
Beomseok JeonDepartment of Neurology, Movement Disorder Center, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, South Korea.
Garvan Institute of Medical Research · AUSeoul National University Hospital · KRChungbuk National University Hospital · KRConcord Hospital · USKyung Hee University Medical Center · KRPresbyterian Medical Center · KRRoyal North Shore Hospital · AUThe University of Sydney · AU

Funding

University of Sydney Kickstarter Grant
6 · The paper itself

Abstract

Inherited disorders of spasticity or ataxia exist on a spectrum with overlapping causative genes and phenotypes. We investigated the use of whole-genome sequencing (WGS) to detect a genetic cause when considering this spectrum of disorders as a single group. We recruited 18 Korean individuals with spastic paraplegia with or without cerebellar ataxia in whom common causes of hereditary cerebellar ataxia and hereditary spastic paraplegia had been excluded. We performed WGS with analysis for single nucleotide variants, small insertions and deletions, copy number variants (CNVs), structural variants (SVs) and intronic variants. Disease-relevant variants were identified in ABCD1 (n = 3), CAPN1 (n = 2), NIPA1 (n = 1) and PLA2G6 (n = 1) for 7/18 patients (38.9%). A 'reverse phenotyping' approach was used to clarify the diagnosis in individuals with PLA2G6 and ABCD1 variants. One of the ABCD1 disease-relevant variants was detected on analysis for intronic variants. No CNV or SV causes were found. The two males with ABCD1 variants were initiated on monitoring for adrenal dysfunction. This is one of only a few studies to analyse spastic-ataxias as a continuous spectrum using a single approach. The outcome was improved diagnosis of unresolved cases for which common genetic causes had been excluded. This includes the detection of ABCD1 variants which had management implications. Therefore, WGS may be particularly relevant to diagnosing spastic ataxias given the large number of genes associated with this condition and the relatively high diagnostic yield.

Indexed as

AdolescentAdultAgedAsian PeopleATP Binding Cassette Transporter, Subfamily D, Member 1CalpainCerebellar AtaxiaChildFemaleGene DosageGenetic VariationGroup VI Phospholipases A2High-Throughput Nucleotide SequencingHumansMaleMembrane ProteinsABCD1 protein, humanATP Binding Cassette Transporter, Subfamily D, Member 1CalpainCAPN1 protein, humanGroup VI Phospholipases A2Membrane ProteinsNIPA1 protein, humanPLA2G6 protein, humanAtaxiaCerebellarDiagnosisHereditary spastic paraplegiaSpasticWhole-genome sequencing

Identifiers

PMID31104286
OpenAlexW2946457880

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.