Evidence map›Paper›PMID 31103233›Full record

ArticleBiophysical journal2019

Registration and Visualization of Correlative Super-Resolution Microscopy Data.

Sebastian Reinhard, Sarah Aufmkolk, Markus Sauer, Sören Doose

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Sebastian ReinhardDepartment of Biotechnology and Biophysics, University of Würzburg, Biocenter, Am Hubland, Würzburg, Germany.
Sarah AufmkolkDepartment of Biotechnology and Biophysics, University of Würzburg, Biocenter, Am Hubland, Würzburg, Germany; Department of Neurology & Neurosurgery, Montréal Neurological Institute, Montréal, Québec, Canada; Department of Chemistry, McGill University, Montréal, Québec, Canada.
Markus SauerDepartment of Biotechnology and Biophysics, University of Würzburg, Biocenter, Am Hubland, Würzburg, Germany. Electronic address: m.sauer@uni-wuerzburg.de.
Sören DooseDepartment of Biotechnology and Biophysics, University of Würzburg, Biocenter, Am Hubland, Würzburg, Germany. Electronic address: soeren.doose@uni-wuerzburg.de.
University of Würzburg · DEMcGill University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We introduce a method for registration and visualization of correlative super-resolution microscopy images from different microscopy techniques. We established an automated registration procedure based on the generalized Hough transform. We developed a software tool to apply this algorithm and visualize correlated images from structured illumination microscopy (SIM) and direct stochastic optical reconstruction microscopy (dSTORM). To demonstrate the potential of this super-resolution correlator, we visualize the distribution of the presynaptic protein bassoon in the active zones of synapses in the molecular layer of the mouse cerebellum. First, a multiple labeled sample is imaged by SIM, followed by imaging of one of the fluorescent labels by dSTORM. To avoid the use of artificial fiducial markers, we used the signal of Alexa Fluor 647 recorded in switching buffer on the two microscopes for image superposition. We recorded multicolor SIM images in 20-μm thick brain slices to identify synapses in the dendritic system of Purkinje cells and put higher-resolved dSTORM images of the synaptic distribution of bassoon in registry.

Indexed as

MicroscopySignal-To-Noise RatioImage Processing, Computer-AssistedSynapses

Identifiers

PMID31103233
PMCPMC6554482
OpenAlexW2943805928

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.