Evidence map›Paper›PMID 31102422›Full record

ArticleGenes, chromosomes & cancer2019

Predisposing germline mutations in high hyperdiploid acute lymphoblastic leukemia in children.

Adam J de Smith, Geneviève Lavoie, Kyle M Walsh, Sumeet Aujla, Erica Evans, Helen M Hansen, Ivan Smirnov, Alice Y Kang, Martin Zenker, John J Ceremsak and 7 more

Open access · greenAbstract read
In one paragraph

Article in Genes, chromosomes & cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Trial
  2. Review
  3. Review
  4. Article
  5. Article
  6. Update on Recommendations for Surveillance for Children with Predisposition to Hematopoietic Malignancy.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Review
  7. Mycovirus-ContainingInternational journal of molecular sciences · 2024
    Article
  8. Overview on Aneuploidy in Childhood B-Cell Acute Lymphoblastic Leukemia.International journal of molecular sciences · 2023
    Review
  9. Article
  10. Review
  11. Review
  12. Resistance Mechanisms in Pediatric B-Cell Acute Lymphoblastic Leukemia.International journal of molecular sciences · 2022
    Review
  13. Article
  14. Telomerase (Genes · 2021
    Article
  15. Targeting Akt in cancer for precision therapy.Journal of hematology & oncology · 2021
    Review
  16. Article
  17. Review
  18. Review
  19. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 3 countries.

Adam J de SmithCenter for Genetic Epidemiology, Department of Preventive Medicine, USC Keck School of Medicine, Los Angeles, California.ORCID 0000-0003-4880-7543
Geneviève LavoieInstitute for Research in Immunology and Cancer (IRIC), Université de Montréal, Montreal, Quebec, Canada.
Kyle M WalshDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California.
Sumeet AujlaDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California.
Erica EvansDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California.
Helen M HansenDepartment of Neurological Surgery, University of California San Francisco, San Francisco, California.
Ivan SmirnovDepartment of Neurological Surgery, University of California San Francisco, San Francisco, California.
Alice Y KangSchool of Public Health, University of California, Berkeley, Berkeley, California.
Martin ZenkerUniversity Hospital Magdeburg, Institute of Human Genetics, Magdeburg, Germany.
John J CeremsakDepartment of Pediatrics, University of California San Francisco, San Francisco, California.
Elliot StieglitzDepartment of Pediatrics, University of California San Francisco, San Francisco, California.
Ivo S MuskensCenter for Genetic Epidemiology, Department of Preventive Medicine, USC Keck School of Medicine, Los Angeles, California.
William RobertsDivision of Pediatric Hematology/Oncology, Department of Pediatrics, University of California San Diego, San Diego, California.
Roberta McKean-CowdinDepartment of Preventive Medicine, USC Keck School of Medicine, Los Angeles, California.
Catherine MetayerSchool of Public Health, University of California, Berkeley, Berkeley, California.
Philippe P RouxInstitute for Research in Immunology and Cancer (IRIC), Université de Montréal, Montreal, Quebec, Canada.
Joseph L WiemelsCenter for Genetic Epidemiology, Department of Preventive Medicine, USC Keck School of Medicine, Los Angeles, California.
University of California, San Francisco · USBerkeley Public Health Division · USInstitute for Research in Immunology and Cancer · CAKeck Hospital of USC · USDuke University · USUniversity Hospital Magdeburg · DEUniversity of San Diego · US

Funding

Environmental and Molecular Epidemiology of Childhood LeukemiaR01ES009137 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI METAYER, CATHERINE · 1999 to 2013
$21.1M
Genome-Wide Association Study of Childhood Leukemia by Hispanic StatusR01CA155461 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MA, XIAOMEI, WIEMELS, JOSEPH LEO · 2011 to 2014
$4.1M
Project 3: Prenatal Exposure, DNA Methylation & Childhood LeukemiaP01ES018172 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI METAYER, CATHERINE · 2009 to 2013
$3.7M
Perinatal immune development and risk of childhood acute lymphoblastic leukemiaR01CA175737 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MA, XIAOMEI, WIEMELS, JOSEPH LEO · 2014 to 2018
$3.0M
Support For Infrastructure of Childhood Leukemia Environmental ResearchR24ES028524 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Catherine Metayer · 2017 to 2026
$2.3M
CIHR MOP-142374CIHR PJT-152995NCI NIH HHS R01 CA155461NCI NIH HHS R01 CA175737NIEHS NIH HHS P01 ES018172NIEHS NIH HHS R01 ES009137NIEHS NIH HHS R24 ES028524
6 · The paper itself

Abstract

High hyperdiploidy (HD) is the most common cytogenetic subtype of childhood acute lymphoblastic leukemia (ALL), and a higher incidence of HD has been reported in ALL patients with congenital cancer syndromes. We assessed the frequency of predisposing germline mutations in 57 HD-ALL patients from the California Childhood Leukemia Study via targeted sequencing of cancer-relevant genes. Three out of 57 patients (5.3%) harbored confirmed germline mutations that were likely causal, in NBN, ETV6, and FLT3, with an additional six patients (10.5%) harboring putative predisposing mutations that were rare in unselected individuals (<0.01% allele frequency in the Exome Aggregation Consortium, ExAC) and predicted functional (scaled CADD score ≥ 20) in known or potential ALL predisposition genes (SH2B3, CREBBP, PMS2, MLL, ABL1, and MYH9). Three additional patients carried rare and predicted damaging germline mutations in GAB2, a known activator of the ERK/MAPK and PI3K/AKT pathways and binding partner of PTPN11-encoded SHP2. The frequency of rare and predicted functional germline GAB2 mutations was significantly higher in our patients (2.6%) than in ExAC (0.28%, P = 4.4 × 10

Indexed as

Gene FrequencyGerm-Line MutationAdaptor Proteins, Signal TransducingChildFrameshift MutationGenetic Predisposition to DiseaseHEK293 CellsHumansPenetrancePrecursor Cell Lymphoblastic Leukemia-LymphomaAdaptor Proteins, Signal TransducingGAB2 protein, humanacute lymphoblastic leukemiaALLFLT3GAB2germline mutationshigh hyperdiploidy

Identifiers

PMID31102422
PMCPMC6684857
OpenAlexW2945631713

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.