Evidence map›Paper›PMID 31101900›Full record

ArticleNature communications2019

In situ structures of rotavirus polymerase in action and mechanism of mRNA transcription and release.

Ke Ding, Cristina C Celma, Xing Zhang, Thomas Chang, Wesley Shen, Ivo Atanasov, Polly Roy, Z Hong Zhou

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Mechanism of membrane perforation in rotavirus cell entry.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Nucleic Acid Packaging in Viruses.Sub-cellular biochemistry · 2024
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ke DingDepartment of Bioengineering, University of California, Los Angeles, CA, 90095, USA.
Cristina C CelmaDepartment of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK.
Xing ZhangCalifornia NanoSystems Institute, University of California, Los Angeles, CA, 90095, USA.
Thomas ChangCalifornia NanoSystems Institute, University of California, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0001-5067-1150
Wesley ShenCalifornia NanoSystems Institute, University of California, Los Angeles, CA, 90095, USA.
Ivo AtanasovCalifornia NanoSystems Institute, University of California, Los Angeles, CA, 90095, USA.
Polly RoyDepartment of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK. Polly.Roy@lshtm.ac.uk.ORCID http://orcid.org/0000-0001-6535-6911
Z Hong ZhouDepartment of Bioengineering, University of California, Los Angeles, CA, 90095, USA. Hong.Zhou@ucla.edu.ORCID http://orcid.org/0000-0002-8373-4717

Funding

Genome Structure, Transcription and Packaging of dsRNA VirusesR01AI094386 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Z Hong ZHOU · 2012 to 2026
$6.0M
High-Resolution CryoEM Reconstruction of Large ComplexesR01GM071940 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHOU, Z HONG · 2006 to 2025
$5.0M
In situ atomic structures of the Kaposi's sarcoma-associated herpesvirus portal-terminase complex and glycoproteinsR01DE025567 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WU, TING-TING, ZHOU, Z HONG · 2016 to 2024
$4.0M
INTERACTIONS OF PROTEINS IN THE BLUETONGUE VIRUS CORER01AI045000 · NIAID · U OF L LONDON SCH/HYGIENE &TROPICAL MED · PI ROY, POLLY · 2000 to 2017
$3.8M
West/Midwest Consortium for High-Resolution Cryo Electron MicroscopyU24GM116792 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AGBANDJE-MCKENNA, MAVIS, DOKLAND, TERJE · 2016 to 2020
$3.0M
HIGH-END CRYOEM INSTRUMENT FOR UCLA ELECTRON IMAGING CTR FOR NANOMACHINES: AIDSS10RR023057 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2006 to 2006
$1.6M
Direct Detection Device for atomic resolution cryoEM of macromolecular complexesS10OD018111 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2014 to 2014
$598k
NCRR NIH HHS S10 RR023057NIAID NIH HHS R01 AI045000NIAID NIH HHS R01 AI094386NIDCR NIH HHS R01 DE025567NIGMS NIH HHS R01 GM071940NIGMS NIH HHS U24 GM116792NIH HHS S10 OD018111
6 · The paper itself

Abstract

Transcribing and replicating a double-stranded genome require protein modules to unwind, transcribe/replicate nucleic acid substrates, and release products. Here we present in situ cryo-electron microscopy structures of rotavirus dsRNA-dependent RNA polymerase (RdRp) in two states pertaining to transcription. In addition to the previously discovered universal "hand-shaped" polymerase core domain shared by DNA polymerases and telomerases, our results show the function of N- and C-terminal domains of RdRp: the former opens the genome duplex to isolate the template strand; the latter splits the emerging template-transcript hybrid, guides genome reannealing to form a transcription bubble, and opens a capsid shell protein (CSP) to release the transcript. These two "helicase" domains also extensively interact with CSP, which has a switchable N-terminal helix that, like cellular transcriptional factors, either inhibits or promotes RdRp activity. The in situ structures of RdRp, CSP, and RNA in action inform mechanisms of not only transcription, but also replication.

Indexed as

AnimalsCapsid ProteinsCell LineChlorocebus aethiopsCryoelectron MicroscopyDNA ReplicationModels, MolecularProtein DomainsRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, MessengerRNA, ViralRotavirusTranscription, GeneticVirus ReplicationCapsid ProteinsRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, MessengerRNA, Viral

Identifiers

PMID31101900
PMCPMC6525196

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.