Evidence map›Paper›PMID 31101653›Full record

ArticleG3 (Bethesda, Md.)2019

Expression Signatures of Cisplatin- and Trametinib-Treated Early-Stage Medaka Melanomas.

Barbara Klotz, Susanne Kneitz, Yuan Lu, William Boswell, John Postlethwait, Wesley Warren, Ronald B Walter, Manfred Schartl

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Barbara KlotzPhysiological Chemistry, Biocenter, University of Wuerzburg, 97074 Wuerzburg, Germany.ORCID 0000-0002-4988-3575
Susanne KneitzPhysiological Chemistry, Biocenter, University of Wuerzburg, 97074 Wuerzburg, Germany.
Yuan LuThe Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, 419 Centennial Hall, Texas State University, San Marcos, TX 78666.
William BoswellThe Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, 419 Centennial Hall, Texas State University, San Marcos, TX 78666.
John PostlethwaitInstitute of Neuroscience, University of Oregon, Eugene, Oregon, OR 97401.
Wesley WarrenGenome Sequencing Center, Washington University School of Medicine, St Louis, MO 63108.
Ronald B WalterThe Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, 419 Centennial Hall, Texas State University, San Marcos, TX 78666.
Manfred SchartlPhysiological Chemistry, Biocenter, University of Wuerzburg, 97074 Wuerzburg, Germany phch1@biozentrum.uni-wuerzburg.de.ORCID 0000-0001-9882-5948
Texas State University · USUniversity of Würzburg · DEUniversity of Oregon · USWashington University in St. Louis · US

Funding

Enhanced Development of the Xiphophorus Model System R24-OD-011120R24OD011120 · OD · TEXAS STATE UNIVERSITY · PI GABOR, CAITLIN, LU, YUAN · 2012 to 2019
$5.3M
Development of Aquatic Model Resources for Therapeutic ScreensR24OD018555 · OD · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2014 to 2017
$2.6M
NIH HHS R24 OD011120NIH HHS R24 OD018555
6 · The paper itself

Abstract

Small aquarium fish models provide useful systems not only for a better understanding of the molecular basis of many human diseases, but also for first-line screening to identify new drug candidates. For testing new chemical substances, current strategies mostly rely on easy to perform and efficient embryonic screens. Cancer, however, is a disease that develops mainly during juvenile and adult stage. Long-term treatment and the challenge to monitor changes in tumor phenotype make testing of large chemical libraries in juvenile and adult animals cost prohibitive. We hypothesized that changes in the gene expression profile should occur early during anti-tumor treatment, and the disease-associated transcriptional change should provide a reliable readout that can be utilized to evaluate drug-induced effects. For the current study, we used a previously established medaka melanoma model. As proof of principle, we showed that exposure of melanoma developing fish to the drugs cisplatin or trametinib, known cancer therapies, for a period of seven days is sufficient to detect treatment-induced changes in gene expression. By examining whole body transcriptome responses we provide a novel route toward gene panels that recapitulate anti-tumor outcomes thus allowing a screening of thousands of drugs using a whole-body vertebrate model. Our results suggest that using disease-associated transcriptional change to screen therapeutic molecules in small fish model is viable and may be applied to pre-clinical research and development stages in new drug discovery.

Indexed as

Biomarkers, TumorTranscriptomeAnimalsAnimals, Genetically ModifiedCell Line, TumorCisplatinComputational BiologyDisease Models, AnimalGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMelanomaOryziasPyridonesPyrimidinonesXenograft Model Antitumor AssaysBiomarkers, TumorCisplatinPyridonesPyrimidinonestrametinibanti-cancer drugsGene expression signaturemelanomaRNA-sequencingtransgenic medaka model

Identifiers

PMID31101653
PMCPMC6643878
OpenAlexW2946638006

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.