Evidence map›Paper›PMID 31101013›Full record

ArticleBMC genomics2019

A deficiency in SUMOylation activity disrupts multiple pathways leading to neural tube and heart defects in Xenopus embryos.

Michelle M Bertke, Kyle M Dubiak, Laura Cronin, Erliang Zeng, Paul W Huber

Abstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Natural Products Against Renal FibrosisFrontiers in pharmacology · 2022
    Review
  6. Protein sumoylation in normal and cancer stem cells.Frontiers in molecular biosciences · 2022
    Review
  7. Review
  8. Review
  9. SUMOylation in development and neurodegeneration.Development (Cambridge, England) · 2020
    Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Michelle M BertkeDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, 46556, USA.
Kyle M DubiakDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, 46556, USA.
Laura CroninDepartment of Computer Science and Engineering, University of Notre Dame, Notre Dame, Indiana, 46556, USA.
Erliang ZengDepartment of Computer Science and Engineering, University of Notre Dame, Notre Dame, Indiana, 46556, USA.
Paul W HuberDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, 46556, USA. phuber@nd.edu.ORCID http://orcid.org/0000-0002-2603-0334

Funding

Office of Research University of Notre Dame (US) none
6 · The paper itself

Abstract

backgroundAdenovirus protein, Gam1, triggers the proteolytic destruction of the E1 SUMO-activating enzyme. Microinjection of an empirically determined amount of Gam1 mRNA into one-cell Xenopus embryos can reduce SUMOylation activity to undetectable, but nonlethal, levels, enabling an examination of the role of this post-translational modification during early vertebrate development.

resultsWe find that SUMOylation-deficient embryos consistently exhibit defects in neural tube and heart development. We have measured differences in gene expression between control and embryos injected with Gam1 mRNA at three developmental stages: early gastrula (immediately following the initiation of zygotic transcription), late gastrula (completion of the formation of the three primary germ layers), and early neurula (appearance of the neural plate). Although changes in gene expression are widespread and can be linked to many biological processes, three pathways, non-canonical Wnt/PCP, snail/twist, and Ets-1, are especially sensitive to the loss of SUMOylation activity and can largely account for the predominant phenotypes of Gam1 embryos. SUMOylation appears to generate different pools of a given transcription factor having different specificities with this post-translational modification involved in the regulation of more complex, as opposed to housekeeping, processes.

conclusionsWe have identified changes in gene expression that underlie the neural tube and heart phenotypes resulting from depressed SUMOylation activity. Notably, these developmental defects correspond to the two most frequently occurring congenital birth defects in humans, strongly suggesting that perturbation of SUMOylation, either globally or of a specific protein, may frequently be the origin of these pathologies.

Indexed as

Gene Expression Regulation, DevelopmentalSumoylationAnimalsEmbryo, MammalianFemaleGene Expression ProfilingHeart Defects, CongenitalMaleNeural Tube DefectsViral ProteinsXenopus laevisXenopus ProteinsCELO protein, adenovirusViral ProteinsXenopus ProteinsCongenital birth defectsHeart developmentNeural tube developmentNon-canonical Wnt signalingPlanar cell polaritySUMO

Identifiers

PMID31101013
PMCPMC6525467

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.