Evidence map›Paper›PMID 31100442›Full record

ArticleClinical immunology (Orlando, Fla.)2019

Cis-regulatory genetic variants in the CCR5 gene and natural HIV-1 control in black South Africans.

Gemma W Koor, Maria Paximadis, Anabela C P Picton, Fidan Karatas, Shayne A Loubser, Weijing He, Sunil K Ahuja, Richard E Chaisson, Neil Martinson, Osman Ebrahim and 1 more

Abstract read
In one paragraph

Article in Clinical immunology (Orlando, Fla.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. The Influence BetweenAIDS research and human retroviruses · 2023
    Review
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Gemma W KoorCentre for HIV & STIs, National Institute for Communicable Diseases, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Maria PaximadisCentre for HIV & STIs, National Institute for Communicable Diseases, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa. Electronic address: paxim@nicd.ac.za.
Anabela C P PictonCentre for HIV & STIs, National Institute for Communicable Diseases, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Fidan KaratasCentre for HIV & STIs, National Institute for Communicable Diseases, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Shayne A LoubserCentre for HIV & STIs, National Institute for Communicable Diseases, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Weijing HeVeterans Administration Research Center for AIDS and HIV-1 Infection, South Texas Veterans Health Care System, San Antonio, TX, United States of America; Center for Personalized Medicine, South Texas Veterans Health Care System, San Antonio, TX, United States of America; Department of Medicine, University of Texas Health Science Center, San Antonio, TX, United States of America.
Sunil K AhujaVeterans Administration Research Center for AIDS and HIV-1 Infection, South Texas Veterans Health Care System, San Antonio, TX, United States of America; Center for Personalized Medicine, South Texas Veterans Health Care System, San Antonio, TX, United States of America; Department of Medicine, University of Texas Health Science Center, San Antonio, TX, United States of America; Department of Microbiology, University of Texas Health Science Center, San Antonio, TX, United States of America.
Richard E ChaissonJohns Hopkins University Center for AIDS Research, Baltimore, MD, United States of America.
Neil MartinsonPerinatal HIV Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; Medical Research Council Soweto Matlosana Centre for HIV/AIDS and TB Research, Johannesburg, South Africa.
Osman EbrahimSchool of Clinical Medicine, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Caroline T TiemessenCentre for HIV & STIs, National Institute for Communicable Diseases, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.

Funding

Vaccine Response and Immunotherapeutics SWGP30AI094189 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Richard E. Chaisson · 2012 to 2026
$67.0M
Longitudinal Study of HIV-Associated Lung Infections in SowetoR01HL090312 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI CHAISSON, RICHARD E. · 2007 to 2012
$3.3M
NHLBI NIH HHS R01 HL090312NIAID NIH HHS P30 AI094189
6 · The paper itself

Abstract

Studies have investigated CCR5 haplotypes (HHA, HHB, HHC, HHD, HHE, HHF*1, HHF*2, HHG*1, HHG*2), defined by seven 5'UTR single nucleotide polymorphisms (SNPs), CCR2-V64I and CCR5Δ32, in HIV-1 disease. CCR5 cis-regulatory regions were sequenced, CCR2-V64I and CCR5Δ32 genotyped, and compared in HIV-1-infected black South Africans: 71 HIV-1 controllers (23 elite controllers, 37 viraemic controllers (VCs), 11 high viral load long-term non-progressors) and 74 progressors. The HHE haplotype and 3'UTR +2919 T > G SNP heterozygosity were underrepresented in total controllers and VCs vs. progressors (p = .004; p = .007 and p = .002, p

Indexed as

3' Untranslated RegionsAdultAgedBlack PeopleCD4 Lymphocyte CountDisease ProgressionFemaleGenetic VariationHaplotypesHIV-1HIV InfectionsHumansMaleMiddle AgedPolymorphism, Single NucleotideReceptors, CCR53' Untranslated RegionsCCR5 protein, humanReceptors, CCR5CCR5Cis-regulatory regionsGenetic variantsHIV-1Natural controlSouth Africa

Identifiers

PMID31100442
PMCPMC6646080

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.