Evidence map›Paper›PMID 31099194›Full record

ArticleJournal of Korean medical science2019

Methylation Signature for Prediction of Progression Free Survival in Surgically Treated Clear Cell Renal Cell Carcinoma.

Ho Won Kang, Hongyong Park, Sung Pil Seo, Young Joon Byun, Xuan Mei Piao, Sung Min Kim, Won Tae Kim, Seok Joong Yun, Wooyeong Jang, Ho Sun Shon and 4 more

Open access · goldAbstract read
In one paragraph

Article in Journal of Korean medical science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. DNA Methylation inCancers · 2021
    Article
  10. Article
  11. Article
  12. Review
  13. Clinical Significance ofOncoTargets and therapy · 2021
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Ho Won Kang *Department of Urology, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Korea.ORCID https://orcid.org/0000-0002-8164-4427
Hongyong Park *Astellas Pharma Korea, Inc., Seoul, Korea.ORCID https://orcid.org/0000-0001-6183-8059
Sung Pil SeoDepartment of Urology, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Korea.ORCID https://orcid.org/0000-0001-6179-7031
Young Joon ByunDepartment of Urology, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Korea.ORCID https://orcid.org/0000-0002-9449-478X
Xuan Mei PiaoDepartment of Urology, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Korea.ORCID https://orcid.org/0000-0001-6847-7743
Sung Min KimDepartment of Urology, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Korea.ORCID https://orcid.org/0000-0002-2374-020X
Won Tae KimDepartment of Urology, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Korea.ORCID https://orcid.org/0000-0002-7482-4550
Seok Joong YunDepartment of Urology, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Korea.ORCID https://orcid.org/0000-0001-7737-4746
Wooyeong JangClinical Genomics Analysis Branch, National Cancer Center, Goyang, Korea.ORCID https://orcid.org/0000-0002-6688-0333
Ho Sun ShonMedical Research Institute, School of Medicine, Chungbuk National University, Cheongju, Korea.ORCID https://orcid.org/0000-0002-6717-7869
Keun Ho RyuDepartment of Computer Science, Chungbuk National University, Cheongju, Korea.ORCID https://orcid.org/0000-0003-0394-9054
Sang Cheol LeeDepartment of Urology, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Korea.ORCID https://orcid.org/0000-0002-4163-2210
Wun Jae KimDepartment of Urology, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Korea.ORCID https://orcid.org/0000-0002-8060-8926
Yong June KimDepartment of Urology, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Korea. urokyj@cbnu.ac.kr.ORCID https://orcid.org/0000-0001-7638-7174
Chungbuk National University Hospital · KRChungbuk National University · KRAstellas Pharma (South Korea) · KRNational Cancer Center · US

Funding

National Research Foundation of Korea 2015R1D1A1A01057786National Research Foundation of Korea 2018R1D1A1B07043906
6 · The paper itself

Abstract

backgroundLittle is known about epigenetic silencing of genes by promoter hypermethylation in renal cell carcinoma (RCC). The aim of this study was to identify prognostic methylation markers in surgically treated clear cell RCC (ccRCC).

methodsMethylation patterns were assayed using the Infinium HumanMethylation450 BeadChip array on pairs of ccRCC and normal tissue from 12 patients. Using quantitative PSQ analysis, tumor-specific hypermethylated genes were validated in 25 independent cohorts and their clinical relevance was also verified in 152 independent cohorts.

resultsUsing genome-wide methylation array, Zinc finger protein 278 (

conclusionThe promoter methylation of

Indexed as

DNA MethylationAgedCarcinoma, Renal CellCluster AnalysisDipeptidyl-Peptidases and Tripeptidyl-PeptidasesFemaleHumansKidney NeoplasmsKruppel-Like Transcription FactorsMaleMembrane ProteinsMiddle AgedNeoplasm MetastasisNeoplasm StagingNerve Tissue ProteinsPotassium ChannelsDipeptidyl-Peptidases and Tripeptidyl-PeptidasesDPP6 protein, humanKruppel-Like Transcription FactorsMembrane ProteinsNALF1 protein, humanNerve Tissue ProteinsPATZ1 protein, humanPotassium ChannelsRepressor ProteinsMethylationProgressionRenal Cell Carcinoma

Identifiers

PMID31099194
PMCPMC6522894
OpenAlexW2946228256

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.