Evidence map›Paper›PMID 31098757›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2019

Genetic architecture of maize chlorotic mottle virus and maize lethal necrosis through GWAS, linkage analysis and genomic prediction in tropical maize germplasm.

Chelang'at Sitonik, L M Suresh, Yoseph Beyene, Michael S Olsen, Dan Makumbi, Kiplagat Oliver, Biswanath Das, Jumbo M Bright, Stephen Mugo, Jose Crossa and 3 more

Open access · hybridAbstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 80 citations in OpenAlex.

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  9. Exploiting genomic tools for genetic dissection and improving the resistance to Fusarium stalk rot in tropical maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  10. Genetic dissection of ten photosynthesis-related traits based on InDel- and SNP-GWAS in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Chelang'at SitonikInternational Maize and Wheat Improvement Center (CIMMYT), P.O. Box 1041-00621, Village Market, Nairobi, 00621, Kenya.
L M SureshInternational Maize and Wheat Improvement Center (CIMMYT), P.O. Box 1041-00621, Village Market, Nairobi, 00621, Kenya.
Yoseph BeyeneInternational Maize and Wheat Improvement Center (CIMMYT), P.O. Box 1041-00621, Village Market, Nairobi, 00621, Kenya.
Michael S OlsenInternational Maize and Wheat Improvement Center (CIMMYT), P.O. Box 1041-00621, Village Market, Nairobi, 00621, Kenya.
Dan MakumbiInternational Maize and Wheat Improvement Center (CIMMYT), P.O. Box 1041-00621, Village Market, Nairobi, 00621, Kenya.
Kiplagat OliverDepartment of Plant Breeding and Biotechnology, University of Eldoret (UoE), P.O. Box 1125, Eldoret, 30100, Kenya.
Biswanath DasInternational Maize and Wheat Improvement Center (CIMMYT), P.O. Box 1041-00621, Village Market, Nairobi, 00621, Kenya.
Jumbo M BrightInternational Maize and Wheat Improvement Center (CIMMYT), P.O. Box 1041-00621, Village Market, Nairobi, 00621, Kenya.
Stephen MugoInternational Maize and Wheat Improvement Center (CIMMYT), P.O. Box 1041-00621, Village Market, Nairobi, 00621, Kenya.
Jose CrossaInternational Maize and Wheat Improvement Center (CIMMYT), El Batan, Texcoco, DF, Mexico.
Amsal TarekegneInternational Maize and Wheat Improvement Center (CIMMYT), 12.5 km Peg Mazowe Road, Mount Pleasant, P.O. Box MP163, Harare, Zimbabwe.
Boddupalli M PrasannaInternational Maize and Wheat Improvement Center (CIMMYT), P.O. Box 1041-00621, Village Market, Nairobi, 00621, Kenya. b.m.prasanna@cgiar.org.
Manje GowdaInternational Maize and Wheat Improvement Center (CIMMYT), P.O. Box 1041-00621, Village Market, Nairobi, 00621, Kenya. m.gowda@cgiar.org.ORCID http://orcid.org/0000-0003-4434-6364
International Maize and Wheat Improvement Center · KEUniversity of Eldoret · KECentro Internacional de Mejoramiento de Maíz Y Trigo · MX

Funding

Bill and Melinda Gates Foundation OPP1134248
6 · The paper itself

Abstract

key messageAnalysis of the genetic architecture of MCMV and MLN resistance in maize doubled-haploid populations revealed QTLs with major effects on chromosomes 3 and 6 that were consistent across genetic backgrounds and environments. Two major-effect QTLs, qMCMV3-108/qMLN3-108 and qMCMV6-17/qMLN6-17, were identified as conferring resistance to both MCMV and MLN. Maize lethal necrosis (MLN) is a serious threat to the food security of maize-growing smallholders in sub-Saharan Africa. The ability of the maize chlorotic mottle virus (MCMV) to interact with other members of the Potyviridae causes severe yield losses in the form of MLN. The objective of the present study was to gain insights and validate the genetic architecture of resistance to MCMV and MLN in maize. We applied linkage mapping to three doubled-haploid populations and a genome-wide association study (GWAS) on 380 diverse maize lines. For all the populations, phenotypic variation for MCMV and MLN was significant, and heritability was moderate to high. Linkage mapping revealed 13 quantitative trait loci (QTLs) for MCMV resistance and 12 QTLs conferring MLN resistance. One major-effect QTL, qMCMV3-108/qMLN3-108, was consistent across populations for both MCMV and MLN resistance. Joint linkage association mapping (JLAM) revealed 18 and 21 main-effect QTLs for MCMV and MLN resistance, respectively. Another major-effect QTL, qMCMV6-17/qMLN6-17, was detected for both MCMV and MLN resistance. The GWAS revealed a total of 54 SNPs (MCMV-13 and MLN-41) significantly associated (P ≤ 5.60 × 10

Indexed as

Genetic LinkageGenome, PlantGenome-Wide Association StudyAllelesArea Under CurvePhenotypePlant DiseasesPolymorphism, Single NucleotideQuantitative Trait LociSeedsTombusviridaeTropical ClimateZea maysmaize chlorotic mottle virus

Identifiers

PMID31098757
PMCPMC6647133
OpenAlexW2946105709

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.