Evidence map›Paper›PMID 31098019›Full record

ArticleIUCrJ2019

Long-wavelength native-SAD phasing: opportunities and challenges.

Shibom Basu, Vincent Olieric, Filip Leonarski, Naohiro Matsugaki, Yoshiaki Kawano, Tomizaki Takashi, Chia-Ying Huang, Yusuke Yamada, Laura Vera, Natacha Olieric and 6 more

Open access · goldAbstract read
In one paragraph

Article in IUCrJ, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Macromolecular crystallography at SPring-8 and SACLA.Journal of synchrotron radiation · 2025
    Article
  4. Article
  5. Article
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  10. Article
  11. Article
  12. Article
  13. Article
  14. Phosphorus and sulfur SAD phasing of the nucleic acid-bound DNA-binding domain of interferon regulatory factor 4.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  15. Crystallographic analysis and phasing of iron-assimilating protein 1 (FEA1) from Chlamydomonas reinhardtii.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  16. Current research in structural biology · 2021
    Article
  17. Article
  18. Journal of applied crystallography · 2020
    Article
  19. Article
  20. Making routine native SAD a reality: lessons from beamline X06DA at the Swiss Light Source.Acta crystallographica. Section D, Structural biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Shibom BasuSwiss Light Source, Paul Scherrer Institut, Villigen PSI, 5232, Switzerland.ORCID https://orcid.org/0000-0001-6484-8236
Vincent OliericSwiss Light Source, Paul Scherrer Institut, Villigen PSI, 5232, Switzerland.ORCID https://orcid.org/0000-0002-0533-7222
Filip LeonarskiSwiss Light Source, Paul Scherrer Institut, Villigen PSI, 5232, Switzerland.ORCID https://orcid.org/0000-0002-2563-7169
Naohiro MatsugakiStructural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization, Tsukuba, 305-0801, Japan.
Yoshiaki KawanoAdvanced Photon Technology Division, RIKEN SPring-8 Center, Hyogo 679-5148, Japan.
Tomizaki TakashiSwiss Light Source, Paul Scherrer Institut, Villigen PSI, 5232, Switzerland.
Chia-Ying HuangSwiss Light Source, Paul Scherrer Institut, Villigen PSI, 5232, Switzerland.
Yusuke YamadaStructural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization, Tsukuba, 305-0801, Japan.
Laura VeraSwiss Light Source, Paul Scherrer Institut, Villigen PSI, 5232, Switzerland.ORCID https://orcid.org/0000-0003-3804-6314
Natacha OliericLaboratory of Biomolecular Research, Department of Biology and Chemistry, Paul Scherrer Institut, Villigen, PSI 5232, Switzerland.
Jerome BasquinDepartment of Biochemistry, Max Planck Institute of Biochemistry, Munich, Germany.
Justyna A WojdylaSwiss Light Source, Paul Scherrer Institut, Villigen PSI, 5232, Switzerland.
Oliver BunkSwiss Light Source, Paul Scherrer Institut, Villigen PSI, 5232, Switzerland.ORCID https://orcid.org/0000-0001-6563-4053
Kay DiederichsDepartment of Biology, University of Konstanz, Konstanz, 78457, Germany.ORCID https://orcid.org/0000-0001-5360-0905
Masaki YamamotoAdvanced Photon Technology Division, RIKEN SPring-8 Center, Hyogo 679-5148, Japan.ORCID https://orcid.org/0000-0002-1311-1768
Meitian WangSwiss Light Source, Paul Scherrer Institut, Villigen PSI, 5232, Switzerland.ORCID https://orcid.org/0000-0002-5340-3036
Paul Scherrer Institute · CHHigh Energy Accelerator Research Organization · JPSPring-8 · JPMax Planck Institute of Biochemistry · DEUniversity of Konstanz · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Native single-wavelength anomalous dispersion (SAD) is an attractive experimental phasing technique as it exploits weak anomalous signals from intrinsic light scatterers (

Indexed as

absorption correctionanomalous scattering factorcrystal shapingnative-SAD phasingSe/S-SADsingle-wavelength anomalous dispersionspherical crystalsstructure determinationUV-laser cutting

Identifiers

PMID31098019
PMCPMC6503925
OpenAlexW2933714133

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.