Evidence map›Paper›PMID 31097817›Full record

ArticleCell research2019

Structural basis of allosteric regulation of Tel1/ATM kinase.

Jiyu Xin, Zhu Xu, Xuejuan Wang, Yanhua Tian, Zhihui Zhang, Gang Cai

Open access · greenAbstract read
In one paragraph

Article in Cell research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. DNA Damage and Replication Stress Checkpoints.Annual review of biochemistry · 2025
    Review
  3. Article
  4. Making PI3K superfamily enzymes run faster.Advances in biological regulation · 2025
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Novel insights into the mechanism of cell cycle kinases Mec1(ATR) and Tel1(ATM).Critical reviews in biochemistry and molecular biology · 2021
    Article
  13. Molecular basis of human ATM kinase inhibition.Nature structural & molecular biology · 2021
    Article
  14. Article
  15. Review
  16. Cryo-EM Structure of Nucleotide-Bound Tel1Structure (London, England : 1993) · 2020
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jiyu Xin *First Affiliated Hospital of USTC, School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China.
Zhu Xu *First Affiliated Hospital of USTC, School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China.
Xuejuan Wang *First Affiliated Hospital of USTC, School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China.
Yanhua TianCollege of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074, Hubei, China.
Zhihui ZhangFirst Affiliated Hospital of USTC, School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China.
Gang CaiFirst Affiliated Hospital of USTC, School of Life Sciences, University of Science and Technology of China, Hefei, 230027, Anhui, China. gcai@ustc.edu.cn.ORCID http://orcid.org/0000-0001-8622-3907
University of Science and Technology of China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ATM/Tel1 is an apical kinase that orchestrates the multifaceted DNA damage response. Mutations of ATM/Tel1 are associated with ataxia telangiectasia syndrome. Here, we report cryo-EM structures of symmetric dimer (4.1 Å) and asymmetric dimer (4.3 Å) of Saccharomyces cerevisiae Tel1. In the symmetric state, the side chains in Tel1 C-terminus (residues 1129-2787) are discernible and an atomic model is built. The substrate binding groove is completely embedded in the symmetric dimer by the intramolecular PRD and intermolecular LID domains. Point mutations in these domains sensitize the S. cerevisiae cells to DNA damage agents and hinder Tel1 activation due to reduced binding affinity for its activator Xrs2/Nbs1. In the asymmetric state, one monomer becomes more compact in two ways: the kinase N-lobe moves down and the Spiral of α-solenoid moves upwards, which resemble the conformational changes observed in active mTOR. The accessibility of the activation loop correlates with the synergistic conformational disorders in the TRD1-TRD2 linker, FATC and PRD domains, where critical post-translational modifications and activating mutations are coincidently condensed. This study reveals a tunable allosteric network in ATM/Tel1, which is important for substrate recognition, recruitment and efficient phosphorylation.

Indexed as

Allosteric RegulationAtaxia Telangiectasia Mutated ProteinsCatalytic DomainCryoelectron MicroscopyDimerizationDNA Breaks, Double-StrandedDNA, FungalIntracellular Signaling Peptides and ProteinsPhosphorylationPoint MutationProtein Conformation, alpha-HelicalProtein DomainsProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTOR Serine-Threonine KinasesAtaxia Telangiectasia Mutated ProteinsDNA, FungalIntracellular Signaling Peptides and ProteinsProtein Serine-Threonine KinasesSaccharomyces cerevisiae ProteinsTEL1 protein, S cerevisiaeTOR Serine-Threonine KinasesXRS2 protein, S cerevisiae

Identifiers

PMID31097817
PMCPMC6796912
OpenAlexW2945421606

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.