ArticleGenome biology2019
Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches.
Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 2 of them syntheses that pooled it.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
40 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Genetic strategies for sex-biased persistence of gut microbes across human life.Nature communications · 2023Pooled it
- The microbial dark matter and "wanted list" in worldwide wastewater treatment plants.Microbiome · 2023Pooled it
- Potential plastic biodegradation in lakes worldwide.Innovation (Cambridge (Mass.)) · 2026Article
- Bifidobacterium's Influential Role in the Battle Against Obesity: Going Beyond Probiotics.Probiotics and antimicrobial proteins · 2026Review
- Insights into toxin-antitoxin systems in the genusApplied and environmental microbiology · 2025Review
- Mining Microbial Dark Matter: Advanced Cultivation Techniques for Bioactive Compound Discovery.Pharmaceuticals (Basel, Switzerland) · 2025Review
- Deep culturing the fecal microbiota of healthy laying hens.Animal microbiome · 2025Article
- Functional modulation of the human gut microbiome by bacteria vehicled by cheese.Applied and environmental microbiology · 2025Article
- Probiotic Bifidobacterium reduces serum TMAO in unstable angina patients via the gut to liver to heart axis.Liver research (Beijing, China) · 2025Article
- Characterization and Optimization of Cellulose-Degrading Bacteria Isolated from Fecal Samples ofMicroorganisms · 2025Article
- Genome assembly of a potential probioticMicrobiology resource announcements · 2024Article
- Disclosing α-lactalbumin impact on the intestinal and vaginal microbiota of women suffering from polycystic ovary syndrome.Microbial biotechnology · 2024Article
- Review
- Meta-omics assisted microbial gene and strain resources mining in contaminant environment.Engineering in life sciences · 2024Review
- Population-level variation in gut bifidobacterial composition and association with geography, age, ethnicity, and staple food.NPJ biofilms and microbiomes · 2023Article
- Review
- Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach.Nature communications · 2023Article
- Isolation and Cultivation of Human Gut Microorganisms: A Review.Microorganisms · 2023Review
- Editorial: Algal symbiotic relationships in freshwater and marine environments.Frontiers in plant science · 2023Article
- Dietary enrichment of resistant starches or fibers differentially alter the feline fecal microbiome and metabolite profile.Animal microbiome · 2022Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Whole metagenome shotgun (WMGS) sequencing is a method that provides insights into the genomic composition and arrangement of complex microbial consortia. Here, we report how WMGS coupled with a cultivation approach allows the isolation of novel bifidobacteria from animal fecal samples. A combination of in silico analyses based on nucleotide and protein sequences facilitate the identification of genetic material belonging to putative novel species. Consequently, the prediction of metabolic properties by in silico analyses permits the identification of specific substrates that are then employed to isolate these species through a cultivation method.
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Registered trials
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