Evidence map›Paper›PMID 31096913›Full record

ArticleBMC genomics2019

Comparative proteomic analysis of okra (Abelmoschus esculentus L.) seedlings under salt stress.

Yihua Zhan, Qingfei Wu, Yue Chen, Mengling Tang, Chendong Sun, Junwei Sun, Chenliang Yu

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
11.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Tapping into the potential of okra (Frontiers in plant science · 2025
    Review
  3. Article
  4. Article
  5. The complete chloroplast genome ofFrontiers in plant science · 2023
    Article
  6. Article
  7. Salt stress proteins in plants: An overview.Frontiers in plant science · 2022
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. OsCpn60β1 is Essential for Chloroplast Development in Rice (International journal of molecular sciences · 2020
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Yihua ZhanState Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China.
Qingfei WuState Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China.
Yue ChenInstitute of Horticulture, Zhejiang Academy of Agriculture Science, Hangzhou, 310021, China.
Mengling TangThe Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, School of Agriculture and Food Science, Zhejiang A&F University, Linan, Hangzhou, 311300, China.
Chendong SunThe Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, School of Agriculture and Food Science, Zhejiang A&F University, Linan, Hangzhou, 311300, China.
Junwei SunCollege of Modern Science and Technology, China Jiliang University, Hangzhou, 310018, China.
Chenliang YuInstitute of Agricultural Equipment, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China. 21007030@zju.edu.cn.ORCID http://orcid.org/0000-0002-2403-4665
ZheJiang Academy of Agricultural Sciences · CNZhejiang A & F University · CNChina Jiliang University · CNHangzhou Academy of Agricultural Sciences · CNState Key Laboratory of Plant Physiology and Biochemistry

Funding

National Natural Science Foundation of China 31701967Natural Science Foundation of Zhejiang Province LQ17C150003the young talent training project of Zhejiang Academy of Agricultural Sciences 2016R23R08E05
6 · The paper itself

Abstract

backgroundSalinization seriously threatens land use efficiency and crop yields across the world. Understanding the mechanisms plants use to protect against salt stress will help breeders develop salt-tolerant vegetable crops. Okra (Abelmoschus esculentus L.) is an important vegetable crop of the mallow family, which is now cultivated in warm regions worldwide. To understand the effects of salt stress on the protein level of okra, a comparative proteomic analysis of okra seedlings grown in the presence of 0 or 300 mmol L

resultsA total of 7179 proteins were identified in this study, for which quantitative information was available for 5774 proteins. In the NaCl/control comparison group, there were 317 differentially expressed proteins (DEPs), of which 165 proteins were upregulated and 152 proteins downregulated in the presence of NaCl. Based on the above data, we carried out a systematic bioinformatics analysis of proteins with information, including protein annotation, domain characteristics, functional classification, and pathway enrichment. Enriched gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway analysis showed that the DEPs were most strongly associated with "response to stress" and "protein processing in endoplasmic reticulum". Furthermore, several heat shock proteins were identified as DEPs.

conclusionsThis information provides a reference direction for further research on the okra proteome in the downstream of the salt stress response, with our data revealing that the responses of okra to salt stress involves by various pathways.

Indexed as

Salt StressAbelmoschusComputational BiologyPlant ProteinsProtein Interaction MapsProteomicsSeedlingsPlant ProteinsDifferential expression proteinHeat shock proteinsOkraProteomicsSalt stressTMT labeling

Identifiers

PMID31096913
PMCPMC6521433
OpenAlexW2947886823

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.