Evidence map›Paper›PMID 31095987›Full record

ArticleJournal of microbiological methods2019

Development of a rapid viability polymerase chain reaction method for detection of Yersinia pestis.

Staci R Kane, Sanjiv R Shah, Teneile M Alfaro

Open access · greenAbstract read
In one paragraph

Article in Journal of microbiological methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Multiplex PCR System for the Diagnosis of Plague.Current molecular medicine · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Staci R KaneLawrence Livermore National Laboratory, Livermore, CA, USA.
Sanjiv R ShahNational Homeland Security Research Center, Office of Research and Development, U.S. Environmental Protection Agency, Washington, DC, USA. Electronic address: shah.sanjiv@epa.gov.
Teneile M AlfaroLawrence Livermore National Laboratory, Livermore, CA, USA.
Lawrence Livermore National Laboratory · USEnvironmental Protection Agency · US

Funding

Intramural EPA EPA999999
6 · The paper itself

Abstract

Due to the occurrence of natural plague outbreaks and its historical usage as a biological weapon, Yersinia pestis is considered one of the high-priority biological threat agents. It can remain viable in certain environments including water for >100 days. Because of its slow-growth characteristic, it usually takes three or more days to detect and confirm the identity of viable Y. pestis cells by PCR, serological, or biochemical assays when using the traditional microbiological plate-culture-based analysis, and that too, assuming faster growing microbes present in a water sample do not mask the Y. pestis colonies and interfere with analysis. Therefore, a rapid-viability Polymerase Chain Reaction (RV-PCR) method was developed for detection of Y. pestis. The RV-PCR method combines 24 h-incubation broth culture in a 48-well plate, and pre- and post-incubation differential PCR analyses, thereby allowing for rapid and high-throughput sample analysis compared with the current plate culture method. One chromosomal and two plasmid gene target-based real-time PCR assays were down-selected, showing ca. 10 genome equivalent detection; the chromosomal assay was then used for RV-PCR method development. A 10

Indexed as

Water MicrobiologyDisease ReservoirsDNA, BacterialDNA PrimersHumansPlaguePlasmidsPolymerase Chain ReactionYersinia pestisDNA, BacterialDNA PrimersBioterrorismDetectionPlagueRV-PCRViabilityWater contaminationYersinia pestis

Identifiers

PMID31095987
PMCPMC6555679
OpenAlexW2945213749

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.