Evidence map›Paper›PMID 31095640›Full record

ArticlePLoS pathogens2019

Limited HIV-2 reservoirs in central-memory CD4 T-cells associated to CXCR6 co-receptor expression in attenuated HIV-2 infection.

Assia Samri, Charlotte Charpentier, Mariama Sadjo Diallo, Mélanie Bertine, Sophie Even, Véronique Morin, Anne Oudin, Christophe Parizot, Gilles Collin, Anne Hosmalin and 8 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. The Hitchhiker Guide to CD4Frontiers in immunology · 2021
    Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 1 country.

Assia SamriSorbonne Université, Inserm 1135, Centre d'immunologie et des maladies infectieuses, Cimi-Paris, Paris, France.ORCID 0000-0002-2610-9915
Charlotte CharpentierIAME, UMR 1137, Inserm, Université Paris Diderot, Sorbonne Paris Cité, Laboratoire de Virologie, Hôpital Bichat, Assistance Publique-Hôpitaux de Paris, Paris, France.
Mariama Sadjo DialloSorbonne Université, Inserm 1135, Centre d'immunologie et des maladies infectieuses, Cimi-Paris, Paris, France.ORCID 0000-0001-9397-6202
Mélanie BertineIAME, UMR 1137, Inserm, Université Paris Diderot, Sorbonne Paris Cité, Laboratoire de Virologie, Hôpital Bichat, Assistance Publique-Hôpitaux de Paris, Paris, France.
Sophie EvenSorbonne Université, Inserm 1135, Centre d'immunologie et des maladies infectieuses, Cimi-Paris, Paris, France.
Véronique MorinSorbonne-Université, Inserm 1135, CNRS ERL8255, Centre d'immunologie et des maladies infectieuses, Cimi-Paris, Paris, France.
Anne OudinSorbonne-Université, Inserm 1135, CNRS ERL8255, Centre d'immunologie et des maladies infectieuses, Cimi-Paris, Paris, France.
Christophe ParizotSorbonne Université, Inserm 1135, Centre d'immunologie et des maladies infectieuses, Cimi-Paris, Paris, France.
Gilles CollinIAME, UMR 1137, Inserm, Université Paris Diderot, Sorbonne Paris Cité, Laboratoire de Virologie, Hôpital Bichat, Assistance Publique-Hôpitaux de Paris, Paris, France.
Anne HosmalinInstitut Cochin, Inserm, U1016, CNRS, UMR8104, Université Paris Descartes, Sorbonne Paris Cité, Paris, France.ORCID 0000-0001-9021-3488
Rémi CheynierInstitut Cochin, Inserm, U1016, CNRS, UMR8104, Université Paris Descartes, Sorbonne Paris Cité, Paris, France.ORCID 0000-0003-1146-660X
Rodolphe ThiébautInserm U1219 Bordeaux Population Health, INRIA SISTM, Univ. Bordeaux, Bordeaux, France.
Sophie MatheronInserm, IAME, UMR 1137, Univ. Paris Diderot, Sorbonne Paris Cité, Assistance Publique -Hôpitaux de Paris, Service des Maladies Infectieuses et Tropicales, Hôpital Bichat, HUPNVS, Paris, France.
Fideline CollinInserm U1219 Bordeaux Population Health, INRIA SISTM, Univ. Bordeaux, Bordeaux, France.ORCID 0000-0002-2224-9339
Rima ZoorobSorbonne-Université, Inserm 1135, CNRS ERL8255, Centre d'immunologie et des maladies infectieuses, Cimi-Paris, Paris, France.
Françoise Brun-VézinetUniversity Paris7, Denis Diderot, Paris, France.
Brigitte AutranSorbonne Université, Inserm 1135, Centre d'immunologie et des maladies infectieuses, Cimi-Paris, AP-HP, Hôpital universitaire Pitié-Salpêtrière, Paris, France.ORCID 0000-0002-3993-9336
ANRS CO5 IMMUNOVIR-2 Study Group
Inserm · FRCentre National de la Recherche Scientifique · FRDélégation Paris 5 · FRUniversité de Bordeaux · FRDélégation Paris 7 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The low pathogenicity and replicative potential of HIV-2 are still poorly understood. We investigated whether HIV-2 reservoirs might follow the peculiar distribution reported in models of attenuated HIV-1/SIV infections, i.e. limited infection of central-memory CD4 T lymphocytes (TCM). Antiretroviral-naive HIV-2 infected individuals from the ANRS-CO5 (12 non-progressors, 2 progressors) were prospectively included. Peripheral blood mononuclear cells (PBMCs) were sorted into monocytes and resting CD4 T-cell subsets (naive [TN], central- [TCM], transitional- [TTM] and effector-memory [TEM]). Reactivation of HIV-2 was tested in 30-day cultures of CD8-depleted PBMCs. HIV-2 DNA was quantified by real-time PCR. Cell surface markers, co-receptors and restriction factors were analyzed by flow-cytometry and multiplex transcriptomic study. HIV-2 DNA was undetectable in monocytes from all individuals and was quantifiable in TTM from 4 individuals (median: 2.25 log10 copies/106 cells [IQR: 1.99-2.94]) but in TCM from only 1 individual (1.75 log10 copies/106 cells). HIV-2 DNA levels in PBMCs (median: 1.94 log10 copies/106 PBMC [IQR = 1.53-2.13]) positively correlated with those in TTM (r = 0.66, p = 0.01) but not TCM. HIV-2 reactivation was observed in the cells from only 3 individuals. The CCR5 co-receptor was distributed similarly in cell populations from individuals and donors. TCM had a lower expression of CXCR6 transcripts (p = 0.002) than TTM confirmed by FACS analysis, and a higher expression of TRIM5 transcripts (p = 0.004). Thus the low HIV-2 reservoirs differ from HIV-1 reservoirs by the lack of monocytic infection and a limited infection of TCM associated to a lower expression of a potential alternative HIV-2 co-receptor, CXCR6 and a higher expression of a restriction factor, TRIM5. These findings shed new light on the low pathogenicity of HIV-2 infection suggesting mechanisms close to those reported in other models of attenuated HIV/SIV infection models.

Indexed as

AdultAgedAntiviral Restriction FactorsCarrier ProteinsCase-Control StudiesCD4-Positive T-LymphocytesCells, CulturedFemaleHIV-2HIV InfectionsHumansImmunologic MemoryLeukocytes, MononuclearMaleMiddle AgedReceptors, CXCR6Antiviral Restriction FactorsCarrier ProteinsCXCR6 protein, humanReceptors, CXCR6TRIM5 protein, humanTripartite Motif ProteinsUbiquitin-Protein Ligases

Identifiers

PMID31095640
PMCPMC6541300
OpenAlexW2946091827

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.