Evidence map›Paper›PMID 31095552›Full record

ArticlePLoS computational biology2019

Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons.

Elisabetta Iavarone, Jane Yi, Ying Shi, Bas-Jan Zandt, Christian O'Reilly, Werner Van Geit, Christian Rössert, Henry Markram, Sean L Hill

Abstract read
In one paragraph

Article in PLoS computational biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Elisabetta IavaroneBlue Brain Project, École polytechnique fédérale de Lausanne (EPFL) Biotech Campus, Geneva, Switzerland.ORCID 0000-0001-5157-247X
Jane YiLaboratory of Neural Microcircuitry, Brain Mind Institute, École polytechnique fédérale de Lausanne (EPFL), Lausanne, Switzerland.ORCID 0000-0002-3632-4176
Ying ShiBlue Brain Project, École polytechnique fédérale de Lausanne (EPFL) Biotech Campus, Geneva, Switzerland.
Bas-Jan ZandtBlue Brain Project, École polytechnique fédérale de Lausanne (EPFL) Biotech Campus, Geneva, Switzerland.ORCID 0000-0003-3546-7228
Christian O'ReillyBlue Brain Project, École polytechnique fédérale de Lausanne (EPFL) Biotech Campus, Geneva, Switzerland.ORCID 0000-0002-3149-4934
Werner Van GeitBlue Brain Project, École polytechnique fédérale de Lausanne (EPFL) Biotech Campus, Geneva, Switzerland.ORCID 0000-0002-2915-720X
Christian RössertBlue Brain Project, École polytechnique fédérale de Lausanne (EPFL) Biotech Campus, Geneva, Switzerland.
Henry MarkramBlue Brain Project, École polytechnique fédérale de Lausanne (EPFL) Biotech Campus, Geneva, Switzerland.
Sean L HillBlue Brain Project, École polytechnique fédérale de Lausanne (EPFL) Biotech Campus, Geneva, Switzerland.ORCID 0000-0001-8055-860X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Somatosensory thalamocortical (TC) neurons from the ventrobasal (VB) thalamus are central components in the flow of sensory information between the periphery and the cerebral cortex, and participate in the dynamic regulation of thalamocortical states including wakefulness and sleep. This property is reflected at the cellular level by the ability to generate action potentials in two distinct firing modes, called tonic firing and low-threshold bursting. Although the general properties of TC neurons are known, we still lack a detailed characterization of their morphological and electrical properties in the VB thalamus. The aim of this study was to build biophysically-detailed models of VB TC neurons explicitly constrained with experimental data from rats. We recorded the electrical activity of VB neurons (N = 49) and reconstructed morphologies in 3D (N = 50) by applying standardized protocols. After identifying distinct electrical types, we used a multi-objective optimization to fit single neuron electrical models (e-models), which yielded multiple solutions consistent with the experimental data. The models were tested for generalization using electrical stimuli and neuron morphologies not used during fitting. A local sensitivity analysis revealed that the e-models are robust to small parameter changes and that all the parameters were constrained by one or more features. The e-models, when tested in combination with different morphologies, showed that the electrical behavior is substantially preserved when changing dendritic structure and that the e-models were not overfit to a specific morphology. The models and their analysis show that automatic parameter search can be applied to capture complex firing behavior, such as co-existence of tonic firing and low-threshold bursting over a wide range of parameter sets and in combination with different neuron morphologies.

Indexed as

Action PotentialsAnimalsBiophysical PhenomenaBiophysicsCerebral CortexDendritesFemaleMaleModels, NeurologicalNeuronsRatsRats, WistarSleepSomatosensory CortexThalamusVentral Thalamic Nuclei

Identifiers

PMID31095552
PMCPMC6541309

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.