Evidence map›Paper›PMID 31095371›Full record

ArticleBiochemistry2019

Chemoproteomics Using Nucleotide Acyl Phosphates Reveals an ATP Binding Site at the Dimer Interface of Procaspase-6.

Eric S Okerberg, Kevin B Dagbay, Jennifer L Green, Ishankumar Soni, Arwin Aban, Tyzoon K Nomanbhoy, Sergey N Savinov, Jeanne A Hardy, John W Kozarich

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. DecipheringmSystems · 2024
    Article
  5. Article
  6. Review
  7. Caspase-7 uses RNA to enhance proteolysis of poly(ADP-ribose) polymerase 1 and other RNA-binding proteins.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Eric S OkerbergActivX Biosciences, Inc. , La Jolla , California 92037 , United States.
Kevin B DagbayDepartment of Chemistry , University of Massachusetts , Amherst , Massachusetts 01002 , United States.
Jennifer L GreenActivX Biosciences, Inc. , La Jolla , California 92037 , United States.
Ishankumar SoniDepartment of Chemistry , University of Massachusetts , Amherst , Massachusetts 01002 , United States.
Arwin AbanActivX Biosciences, Inc. , La Jolla , California 92037 , United States.
Tyzoon K NomanbhoyActivX Biosciences, Inc. , La Jolla , California 92037 , United States.
Sergey N SavinovDepartment of Biochemistry & Molecular Biology , University of Massachusetts , Amherst , Massachusetts 01003 , United States.
Jeanne A HardyDepartment of Chemistry , University of Massachusetts , Amherst , Massachusetts 01002 , United States.ORCID 0000-0002-3406-7997
John W KozarichActivX Biosciences, Inc. , La Jolla , California 92037 , United States.ORCID 0000-0002-9652-2289
University of Massachusetts Amherst · US

Funding

CHEMISTRY-BIOLOGY INTERFACE PREDOCTORAL TRAINING GRANTST32GM008515 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI THOMPSON, LYNMARIE K. · 1995 to 2020
$4.3M
Control of Executioner Caspases with an allosteric switch - SupplementR01GM080532 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI HARDY, JEANNE ANN · 2008 to 2022
$3.8M
NIGMS NIH HHS R01 GM080532NIGMS NIH HHS T32 GM008515
6 · The paper itself

Abstract

Acyl phosphates of ATP (ATPAc) and related nucleotides have proven to be useful for the interrogation of known nucleotide binding sites via specific acylation of conserved lysines (K). In addition, occasional K acylations are identified in proteins without such known sites. Here we present a robust and specific acylation of procaspase-6 by ATPAc at K133 in Jurkat cell lysates. The K133 acylation is dependent on π-π stacking interactions between the adenine moiety of ATPAc and a conserved Y198-Y198 site formed at the homodimeric interface of procaspase-6. Significantly, the Y198A mutation in procaspase-6 abolishes K133 acylation but has no effect on the proteolytic activity of the mature, active caspase-6 Y198A variant. Additional

Indexed as

ProteomicsAdenosine TriphosphateAmino Acid SequenceBinding SitesCaspase 6Enzyme PrecursorsHumansJurkat CellsModels, MolecularProtein ConformationAdenosine TriphosphateCaspase 6Enzyme Precursors

Identifiers

PMID31095371
PMCPMC6874883
OpenAlexW2946415026

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.