Evidence map›Paper›PMID 31093948›Full record

ArticleJournal of the American Society for Mass Spectrometry2019

Mass Spectrometry-Based Integration and Expansion of the Chemical Diversity Harbored Within a Marine Sponge.

Thomas P Cantrell, Christopher J Freeman, Valerie J Paul, Vinayak Agarwal, Neha Garg

Abstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Bioprospecting the Metabolome of PlantEvidence-based complementary and alternative medicine : eCAM · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Multi-Omic Profiling ofMarine drugs · 2020
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Thomas P CantrellEngineered Biosystems Building, School of Chemistry and Biochemistry, Georgia Institute of Technology, 950 Atlantic Drive, Atlanta, GA, 30332-2000, USA.
Christopher J FreemanSmithsonian Marine Station, Smithsonian Institution, Fort Pierce, FL, 34949, USA.
Valerie J PaulSmithsonian Marine Station, Smithsonian Institution, Fort Pierce, FL, 34949, USA.
Vinayak AgarwalSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA, 30332, USA. vagarwal@gatech.edu.
Neha GargEngineered Biosystems Building, School of Chemistry and Biochemistry, Georgia Institute of Technology, 950 Atlantic Drive, Atlanta, GA, 30332-2000, USA. neha.garg@chemistry.gatech.edu.ORCID http://orcid.org/0000-0002-2760-7123

Funding

Understanding natural production of polybrominated toxins and pollutantsR00ES026620 · NIEHS · GEORGIA INSTITUTE OF TECHNOLOGY · PI AGARWAL, VINAYAK · 2017 to 2019
$747k
Alfred P. Sloan Foundation FG-2018-10920National Institute of Environmental Health Sciences R00-ES026620NIEHS NIH HHS R00 ES026620
6 · The paper itself

Abstract

Marine sponges and their associated symbionts produce a structurally diverse and complex set of natural products including alkaloids, terpenoids, peptides, lipids, and steroids. A single sponge with its symbionts can produce all of the above-mentioned classes of molecules and their analogs. Most approaches to evaluating sponge chemical diversity have focused on major metabolites that can be isolated and characterized; therefore, a comprehensive evaluation of intra- (within a molecular family; analogs) and inter-chemical diversity within a single sponge remains incomplete. We use a combination of metabolomics tools, including a supervised approach via manual library search and literature search, and an unsupervised approach via molecular networking and MS2LDA analysis to describe the intra and inter-chemical diversity present in Smenospongia aurea. Furthermore, we use imaging mass spectrometry to link this chemical diversity to either the sponge or the associated cyanobacteria. Using these approaches, we identify seven more molecular features that represent analogs of four previously known peptide/polyketide smenamides and assign the biosynthesis of these molecules to the symbiotic cyanobacteria by imaging mass spectrometry. We extend this analysis to a wide diversity of molecular classes including indole alkaloids and meroterpenes.

Indexed as

AnimalsBiological ProductsCyanobacteriaIndole AlkaloidsMass SpectrometryMetabolomicsPeptidesPolyketidesPoriferaSymbiosisTerpenesBiological ProductsIndole AlkaloidsPeptidesPolyketidesTerpenesChemical diversityImaging mass spectrometryMarine spongeMolecular networkingMS2LDAUntargeted metabolomics

Identifiers

PMID31093948
PMCPMC6675626

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.