Evidence map›Paper›PMID 31093688›Full record

ArticlePlant cell reports2019

SQUAMOSA promoter-binding protein-like 7 mediates copper deficiency response in the presence of high nitrogen in Arabidopsis thaliana.

Mélanie Mermod, Mari Takusagawa, Teruyuki Kurata, Takehiro Kamiya, Toru Fujiwara, Toshiharu Shikanai

Abstract read
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In one paragraph

Article in Plant cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Forestry research · 2026
    Article
  3. Article
  4. Article
  5. Seed Treatment with Salicylic Acid Increases Gene Expression and Activity of Antioxidant Enzymes in Wheat Plants in Zinc or Copper Deficiency.Doklady biological sciences : proceedings of the Academy of Sciences of the USSR, Biological sciences sections · 2023
    Article
  6. TheGenes · 2023
    Article
  7. CITF1 Functions Downstream of SPL7 to Specifically Regulate Cu Uptake inInternational journal of molecular sciences · 2022
    Article
  8. Frontiers in plant science · 2022
    Article
  9. The Superoxide Dismutase Gene Family inFrontiers in plant science · 2022
    Article
  10. Article
  11. Article
  12. Plastid biogenesis and homeostasis.Plant cell reports · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Mélanie MermodGraduate School of Science, Kyoto University, Kyoto, 606-8502, Japan.
Mari TakusagawaGraduate School of Science, Kyoto University, Kyoto, 606-8502, Japan.
Teruyuki KurataGraduate School of Agriculture, Kyushu University, Fukuoka, 812-8581, Japan.
Takehiro KamiyaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657, Japan.
Toru FujiwaraGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657, Japan.
Toshiharu ShikanaiGraduate School of Science, Kyoto University, Kyoto, 606-8502, Japan. shikanai@pmg.bot.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0002-6154-4728
Kyoto University · JPThe University of Tokyo · JPKyushu University · JP

Funding

the Japanese Society for the Promotion of Science 16H06555
6 · The paper itself

Abstract

key messageSQUAMOSA promoter-binding protein-like 7 mediates copper deficiency response in the presence of high nitrogen even with the sufficient level of copper in Arabidopsis thaliana. Under copper (Cu) deficiency, accumulation of mRNA encoding two Cu/Zn superoxide dismutases, CSD1 and CSD2, is downregulated to save Cu for plastocyanin. This downregulation depends on miR398 and is under the control of SQUAMOSA promoter-binding protein-like7 (SPL7). Arabidopsis seedlings are routinely cultured on Murashige and Skoog medium. However, the high nitrogen (N) content of the medium (60 mM) has been shown to induce a similar response to Cu deficiency. The mRNA and protein levels of CSD1 and CSD2 are reduced under high N conditions, even if the Cu concentration in the medium is sufficient (0.1-0.5 µM). In this study, we show that this symptom, similar to the Cu deficiency, occurred in the presence of high N largely depending on SPL7, suggesting that plants actually sensed Cu deficiency. However, a change in N concentration in the medium did not influence the total Cu concentration in shoots or roots. High N did not increase the protein content in leaves but facilitated rapid seedling growth. We speculate that this rapid growth causes a continuous Cu deficiency mainly because of high Cu uptake by mesophyll cells in the leaves. This idea was supported by the observation that plastocyanin did not overaccumulate at the range of 0.1-0.5 µM Cu with 30 mM N. In contrast, in the presence of 5 µM Cu with 30 mM N, plants accumulate more Cu in plastocyanin in the thylakoid lumen, resulting in a slight Cu deficiency in the chloroplast stroma. This process is independent of SPL7.

Indexed as

ArabidopsisArabidopsis ProteinsCarrier ProteinsDNA-Binding ProteinsGene Expression Regulation, PlantTranscription FactorsArabidopsis ProteinsCarrier ProteinsDNA-Binding ProteinsSPL7 protein, ArabidopsisTranscription FactorsArabidopsis thalianaCopper deficiencyCrosstalkNitrogenSPL7

Identifiers

PMID31093688
OpenAlexW2946548030

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.