Evidence map›Paper›PMID 31092861›Full record

ArticleScientific reports2019

Structural and functional characterization of the PDZ domain of the human phosphatase PTPN3 and its interaction with the human papillomavirus E6 oncoprotein.

Mariano Genera, Damien Samson, Bertrand Raynal, Ahmed Haouz, Bruno Baron, Catherine Simenel, Raphael Guerois, Nicolas Wolff, Célia Caillet-Saguy

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  4. Review
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  8. ProxyBind: A compendium of binding sites for proximity-induced pharmacology.Computational and structural biotechnology journal · 2022
    Article
  9. Article
  10. Article
  11. The Role of p38γ in Cancer: From review to outlook.International journal of biological sciences · 2021
    Review
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  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Mariano GeneraRécepteurs-Canaux, Institut Pasteur, UMR 3571, CNRS, F-75724, Paris, France.ORCID http://orcid.org/0000-0002-0999-4182
Damien SamsonRMN des biomolécules, Institut Pasteur, UMR 3528, CNRS, F-75724, Paris, France.
Bertrand RaynalPlate-forme de Biophysique Moléculaire, Institut Pasteur, UMR 3528, CNRS, F-75724, Paris, France.
Ahmed HaouzPlate-forme de Cristallographie, Institut Pasteur UMR 3528, CNRS, F-75724, Paris, France.ORCID http://orcid.org/0000-0003-1196-1635
Bruno BaronPlate-forme de Biophysique Moléculaire, Institut Pasteur, UMR 3528, CNRS, F-75724, Paris, France.
Catherine SimenelRMN des biomolécules, Institut Pasteur, UMR 3528, CNRS, F-75724, Paris, France.
Raphael GueroisInstitut de Biologie Intégrative de la Cellule (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, 91190, Gif-sur-Yvette, Cedex, France.
Nicolas WolffRécepteurs-Canaux, Institut Pasteur, UMR 3571, CNRS, F-75724, Paris, France.
Célia Caillet-SaguyRécepteurs-Canaux, Institut Pasteur, UMR 3571, CNRS, F-75724, Paris, France. celia.caillet-saguy@pasteur.fr.ORCID http://orcid.org/0000-0001-5066-0435
Centre National de la Recherche Scientifique · FRUniversité Paris-Sud · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human protein tyrosine phosphatase non-receptor type 3 (PTPN3) is a PDZ (PSD-95/Dlg/ZO-1) domain-containing phosphatase with a tumor-suppressive or a tumor-promoting role in many cancers. Interestingly, the high-risk genital human papillomavirus (HPV) types 16 and 18 target the PDZ domain of PTPN3. The presence of a PDZ binding motif (PBM) on E6 confers interaction with a number of different cellular PDZ domain-containing proteins and is a marker of high oncogenic potential. Here, we report the molecular basis of interaction between the PDZ domain of PTPN3 and the PBM of the HPV E6 protein. We combined biophysical, NMR and X-ray experiments to investigate the structural and functional properties of the PDZ domain of PTPN3. We showed that the C-terminal sequences from viral proteins encompassing a PBM interact with PTPN3-PDZ with similar affinities to the endogenous PTPN3 ligand MAP kinase p38γ. PBM binding stabilizes the PDZ domain of PTPN3. We solved the X-ray structure of the PDZ domain of PTPN3 in complex with the PBM of the HPV E6 protein. The crystal structure and the NMR chemical shift mapping of the PTPN3-PDZ/peptide complex allowed us to pinpoint the main structural determinants of recognition of the C-terminal sequence of the E6 protein and the long-range perturbations induced upon PBM binding.

Indexed as

Amino Acid SequenceCrystallography, X-RayDNA-Binding ProteinsHuman papillomavirus 16Human papillomavirus 18HumansLigandsMitogen-Activated Protein Kinase 12Oncogene Proteins, ViralPapillomavirus InfectionsPDZ DomainsPhosphoric Monoester HydrolasesProtein BindingProtein StabilityProtein Tyrosine Phosphatase, Non-Receptor Type 3Repressor ProteinsDNA-Binding ProteinsE6 protein, Human papillomavirus type 16E6 protein, Human papillomavirus type 18LigandsMitogen-Activated Protein Kinase 12Oncogene Proteins, ViralPhosphoric Monoester HydrolasesProtein Tyrosine Phosphatase, Non-Receptor Type 3PTPN3 protein, humanRepressor Proteins

Identifiers

PMID31092861
PMCPMC6520365
OpenAlexW2945460969

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.