Evidence map›Paper›PMID 31092835›Full record

ArticleScientific reports2019

Profiling the TRB and IGH repertoire of patients with H5N6 Avian Influenza Virus Infection by high-throughput sequencing.

Wujian Peng, Song Liu, Jingye Meng, Jiali Huang, Jianrong Huang, Donge Tang, Yong Dai

Open access · goldAbstract readCase Reports
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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  11. Protease Inhibitor Use in COVID-19.SN comprehensive clinical medicine · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Wujian PengThe Third People's Hospital of Shenzhen (The Affiliated Shenzhen Third Hospital, Guangdong Medical College), Shenzhen, Guangdong, 518112, P.R. China.
Song LiuClinical medical research center, The Second Clinical Medical College of Jinan University (Shenzhen People's Hospital), Shenzhen, Guangdong, 518020, P.R. China.
Jingye MengThe Third People's Hospital of Shenzhen (The Affiliated Shenzhen Third Hospital, Guangdong Medical College), Shenzhen, Guangdong, 518112, P.R. China.
Jiali HuangZhaoqing First People's Hospital, Zhaoqing, 526020, China.
Jianrong HuangThe Third People's Hospital of Shenzhen (The Affiliated Shenzhen Third Hospital, Guangdong Medical College), Shenzhen, Guangdong, 518112, P.R. China.
Donge TangClinical medical research center, The Second Clinical Medical College of Jinan University (Shenzhen People's Hospital), Shenzhen, Guangdong, 518020, P.R. China.
Yong DaiClinical medical research center, The Second Clinical Medical College of Jinan University (Shenzhen People's Hospital), Shenzhen, Guangdong, 518020, P.R. China. daiyong22@aliyun.com.ORCID http://orcid.org/0000-0002-6840-9158
Guangdong Medical College · CNJinan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Avian Influenza A (H5N6) Virus causes severe influenza disease in humans and is manifested by acute respiratory distress syndrome, multi-organ failure, and high mortality rates. T cells recognize antigens specifically through a membrane protein T cell receptor (TCR). To ward off a wide variety of pathogens, the human adaptive immune system harbors a vast array of TCRs, which are collectively referred to as the TCR repertoire. The B cell receptor (BCR) is involved in inducing the humoral immune response. The generation of a diverse T cell and B cell repertoire is essential for protection against infection. In this study, multiplex PCR based on genomic DNA amplicons and Illumina high-throughput sequencing (HTS) were applied to study the characteristics and polymorphisms of the TRB and IGH repertoire in the peripheral blood mononuclear cells (PBMCs) from two H5N6 AIV patients and six healthy donors (NC). The CDR3 average length in the AIV group was different from the NC group. The TRBV12-3, TRBV12-4, and TRBV15 gene segments and TRBV30/TRBJ1-2, TRBV12-3/TRBJ1-1 and IGHV3-11/IGHJ6 gene segment pairings also exhibited a higher usage in the PBMCs of AIV donors and may provide more information for generating more effective T/B cell targeted diagnosis/protection strategies.

Indexed as

AdultAmino Acid SequenceB-LymphocytesComplementarity Determining RegionsFemaleGenes, T-Cell Receptor betaGenetic VariationHigh-Throughput Nucleotide SequencingHumansInfluenza A virusInfluenza, HumanLeukocytes, MononuclearMaleMultigene FamilyMultiplex Polymerase Chain ReactionReceptors, Antigen, B-CellComplementarity Determining RegionsReceptors, Antigen, B-CellReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID31092835
PMCPMC6520366
OpenAlexW2945144986

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.