Evidence map›Paper›PMID 31091225›Full record

ArticlePLoS genetics2019

HDAC1-mediated repression of the retinoic acid-responsive gene ripply3 promotes second heart field development.

Yuntao Charlie Song, Tracy E Dohn, Ariel B Rydeen, Alex V Nechiporuk, Joshua S Waxman

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. The second heart field: the first 20 years.Mammalian genome : official journal of the International Mammalian Genome Society · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
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  17. From Stripes to a Beating Heart: Early Cardiac Development in Zebrafish.Journal of cardiovascular development and disease · 2021
    Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yuntao Charlie SongDivision of Molecular Cardiovascular Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States of America.ORCID 0000-0003-0218-8601
Tracy E DohnDivision of Molecular Cardiovascular Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States of America.ORCID 0000-0001-7044-4350
Ariel B RydeenDivision of Molecular Cardiovascular Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States of America.ORCID 0000-0002-8865-6420
Alex V NechiporukDepartment of Cell and Developmental Biology, Oregon Health & Science University, Portland, OR, United States of America.
Joshua S WaxmanDivision of Molecular Cardiovascular Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States of America.ORCID 0000-0002-8132-487X
Cincinnati Children's Hospital Medical Center · USOregon Health & Science University · US

Funding

MULTIDISCIPLINARY CARDIAC SCIENCEST32HL007381 · NHLBI · UNIVERSITY OF CHICAGO · PI JEANNE M DECARA, Yoav Gilad · 1985 to 2026
$12.5M
TRAINING IN CARDIOVASCULAR BIOLOGYT32HL007382 · NHLBI · UNIVERSITY OF CINCINNATI · PI SCHWARTZ, ARNOLD · 1985 to 2012
$5.9M
Molecular Mechanisms of Atrial Development and RegenerationR01HL137766 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI Joshua Waxman · 2017 to 2026
$3.9M
Coup-tf dependent mechanisms of ventricular and hemangioblast specificationR01HL112893 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI WAXMAN, JOSHUA · 2013 to 2017
$1.7M
Retinoic acid-dependent epigenetic and transcriptional mechanisms controlling heart developmentR01HL141186 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI WAXMAN, JOSHUA · 2018 to 2021
$1.6M
Genetic analyses of axon transport and microtubule dynamics in ZebrafishR01HD072844 · NICHD · OREGON HEALTH & SCIENCE UNIVERSITY · PI NECHIPORUK, ALEX · 2012 to 2016
$1.6M
NHLBI NIH HHS R01 HL112893NHLBI NIH HHS R01 HL137766NHLBI NIH HHS R01 HL141186NHLBI NIH HHS T32 HL007381NHLBI NIH HHS T32 HL007382NICHD NIH HHS R01 HD072844
6 · The paper itself

Abstract

Coordinated transcriptional and epigenetic mechanisms that direct development of the later differentiating second heart field (SHF) progenitors remain largely unknown. Here, we show that a novel zebrafish histone deacetylase 1 (hdac1) mutant allele cardiac really gone (crg) has a deficit of ventricular cardiomyocytes (VCs) and smooth muscle within the outflow tract (OFT) due to both cell and non-cell autonomous loss in SHF progenitor proliferation. Cyp26-deficient embryos, which have increased retinoic acid (RA) levels, have similar defects in SHF-derived OFT development. We found that nkx2.5+ progenitors from Hdac1 and Cyp26-deficient embryos have ectopic expression of ripply3, a transcriptional co-repressor of T-box transcription factors that is normally restricted to the posterior pharyngeal endoderm. Furthermore, the ripply3 expression domain is expanded anteriorly into the posterior nkx2.5+ progenitor domain in crg mutants. Importantly, excess ripply3 is sufficient to repress VC development, while genetic depletion of Ripply3 and Tbx1 in crg mutants can partially restore VC number. We find that the epigenetic signature at RA response elements (RAREs) that can associate with Hdac1 and RA receptors (RARs) becomes indicative of transcriptional activation in crg mutants. Our study highlights that transcriptional repression via the epigenetic regulator Hdac1 facilitates OFT development through directly preventing expression of the RA-responsive gene ripply3 within SHF progenitors.

Indexed as

AnimalsCell DifferentiationGene Expression Regulation, DevelopmentalHeartHeart VentriclesHistone Deacetylase 1Myocytes, CardiacOrganogenesisRepressor ProteinsStem CellsTranscription FactorsTretinoinVentricular FunctionZebrafishZebrafish ProteinsHDAC1 protein, zebrafishHistone Deacetylase 1Repressor ProteinsTranscription FactorsTretinoinZebrafish Proteins

Identifiers

PMID31091225
PMCPMC6538190
OpenAlexW2945473799

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.