Evidence map›Paper›PMID 31089188›Full record

ArticleScientific reports2019

A universal transcriptomic signature of age reveals the temporal scaling of Caenorhabditis elegans aging trajectories.

Andrei E Tarkhov, Ramani Alla, Srinivas Ayyadevara, Mikhail Pyatnitskiy, Leonid I Menshikov, Robert J Shmookler Reis, Peter O Fedichev

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

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  12. ConsideringCells · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Andrei E TarkhovGero LLC, Nizhny Susalny per. 5/4, Moscow, 105064, Russia. andrey.tarkhov@gero.ai.ORCID http://orcid.org/0000-0003-3350-4785
Ramani AllaCentral Arkansas Veterans Healthcare System, Research Service, Little Rock, Arkansas, USA.
Srinivas AyyadevaraCentral Arkansas Veterans Healthcare System, Research Service, Little Rock, Arkansas, USA.
Mikhail PyatnitskiyGero LLC, Nizhny Susalny per. 5/4, Moscow, 105064, Russia.
Leonid I MenshikovGero LLC, Nizhny Susalny per. 5/4, Moscow, 105064, Russia.
Robert J Shmookler ReisCentral Arkansas Veterans Healthcare System, Research Service, Little Rock, Arkansas, USA.
Peter O FedichevGero LLC, Nizhny Susalny per. 5/4, Moscow, 105064, Russia. peter.fedichev@gero.ai.

Funding

THE APOE-APP AXIS IN ALZHEIMER PATHOGENESISP01AG012411 · NIA · UNIV OF ARKANSAS FOR MED SCIS · PI GRIFFIN, SUE TILTON · 1995 to 2020
$25.0M
BLRD VA I01 BX001655NIA NIH HHS P01 AG012411
6 · The paper itself

Abstract

We collected 60 age-dependent transcriptomes for C. elegans strains including four exceptionally long-lived mutants (mean adult lifespan extended 2.2- to 9.4-fold) and three examples of lifespan-increasing RNAi treatments. Principal Component Analysis (PCA) reveals aging as a transcriptomic drift along a single direction, consistent across the vastly diverse biological conditions and coinciding with the first principal component, a hallmark of the criticality of the underlying gene regulatory network. We therefore expected that the organism's aging state could be characterized by a single number closely related to vitality deficit or biological age. The "aging trajectory", i.e. the dependence of the biological age on chronological age, is then a universal stochastic function modulated by the network stiffness; a macroscopic parameter reflecting the network topology and associated with the rate of aging. To corroborate this view, we used publicly available datasets to define a transcriptomic biomarker of age and observed that the rescaling of age by lifespan simultaneously brings together aging trajectories of transcription and survival curves. In accordance with the theoretical prediction, the limiting mortality value at the plateau agrees closely with the mortality rate doubling exponent estimated at the cross-over age near the average lifespan. Finally, we used the transcriptomic signature of age to identify possible life-extending drug compounds and successfully tested a handful of the top-ranking molecules in C. elegans survival assays and achieved up to a +30% extension of mean lifespan.

Indexed as

AnimalsAnisomycinAzacitidineBenzazepinesCaenorhabditis elegansCaenorhabditis elegans ProteinsCamptothecinDatasets as TopicDipyroneDose-Response Relationship, DrugGene Regulatory NetworksIndolesKaplan-Meier EstimateLongevityModels, AnimalRNA-SeqalsterpaulloneAnisomycinAzacitidineBenzazepinesCaenorhabditis elegans ProteinsCamptothecinDipyroneIndoles

Identifiers

PMID31089188
PMCPMC6517414

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.