Evidence map›Paper›PMID 31088968›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

EHMT2 and SETDB1 protect the maternal pronucleus from 5mC oxidation.

Tie-Bo Zeng, Li Han, Nicholas Pierce, Gerd P Pfeifer, Piroska E Szabó

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 41 citations in OpenAlex.

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  11. Genetic Studies on Mammalian DNA Methyltransferases.Advances in experimental medicine and biology · 2022
    Article
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  14. Chromatin role in early programming of embryos.Animal frontiers : the review magazine of animal agriculture · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Tie-Bo ZengCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503.
Li HanCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503.
Nicholas PierceCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503.
Gerd P PfeiferCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503.
Piroska E SzabóCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503 piroska.szabo@vai.org.
Van Andel Institute · US

Funding

Mechanisms of Genomic ImprintingR01GM064378 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI SZABÓ, PIROSKA EDIT · 2002 to 2015
$4.3M
NIGMS NIH HHS R01 GM064378
6 · The paper itself

Abstract

Genome-wide DNA "demethylation" in the zygote involves global TET3-mediated oxidation of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) in the paternal pronucleus. Asymmetrically enriched histone H3K9 methylation in the maternal pronucleus was suggested to protect the underlying DNA from 5mC conversion. We hypothesized that an H3K9 methyltransferase enzyme, either EHMT2 or SETDB1, must be expressed in the oocyte to specify the asymmetry of 5mC oxidation. To test these possibilities, we genetically deleted the catalytic domain of either EHMT2 or SETDB1 in growing oocytes and achieved significant reduction of global H3K9me2 or H3K9me3 levels, respectively, in the maternal pronucleus. We found that the asymmetry of global 5mC oxidation was significantly reduced in the zygotes that carried maternal mutation of either the

Indexed as

5-MethylcytosineAnimalsFemaleHistone-Lysine N-MethyltransferaseMiceMice, Inbred C57BLMice, KnockoutMutationOocytesOxidation-ReductionZygote5-hydroxymethylcytosine5-MethylcytosineG9a protein, mouseHistone-Lysine N-MethyltransferaseSETDB1 protein, mouse5-hydroxymethylcytosine5-methylcytosineEHMT2maternal effectSTEDB1

Identifiers

PMID31088968
PMCPMC6561192
OpenAlexW2944955304

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.