Evidence map›Paper›PMID 31088926›Full record

ArticlemBio2019

Differential Effects of Influenza Virus NA, HA Head, and HA Stalk Antibodies on Peripheral Blood Leukocyte Gene Expression during Human Infection.

Kathie-Anne Walters, Ruoqing Zhu, Michael Welge, Kelsey Scherler, Jae-Keun Park, Zainab Rahil, Hao Wang, Loretta Auvil, Colleen Bushell, Min Young Lee and 9 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Trial
  4. Trial
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Reply to Bernstein, Atmar, and Hoft.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2020
    Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

Kathie-Anne WaltersInstitute for Systems Biology, Seattle, Washington, USA Kathie.Walters@systemsbiology.org kashj@niaid.nih.gov.
Ruoqing ZhuDepartment of Statistics, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Michael WelgeNational Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Kelsey ScherlerInstitute for Systems Biology, Seattle, Washington, USA.
Jae-Keun ParkViral Pathogenesis and Evolution Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Zainab RahilDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Hao WangDepartment of Statistics, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Loretta AuvilNational Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Colleen BushellNational Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Min Young LeeInstitute for Systems Biology, Seattle, Washington, USA.
David BaxterInstitute for Systems Biology, Seattle, Washington, USA.
Tyler BristolViral Pathogenesis and Evolution Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Luz Angela RosasViral Pathogenesis and Evolution Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Adriana Cervantes-MedinaViral Pathogenesis and Evolution Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Lindsay CzajkowskiViral Pathogenesis and Evolution Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Alison HanViral Pathogenesis and Evolution Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Matthew J MemoliViral Pathogenesis and Evolution Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Jeffery K TaubenbergerViral Pathogenesis and Evolution Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.ORCID 0000-0002-9694-7228
John C KashViral Pathogenesis and Evolution Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA Kathie.Walters@systemsbiology.org kashj@niaid.nih.gov.
National Institutes of Health · USUniversity of Illinois Urbana-Champaign · USInstitute for Systems Biology · US

Funding

Pandemic Influenza Translational Research; Novel Vaccine and Drug TherapyZIAAI001157 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MEMOLI, MATTHEW · 2012 to 2025
$37.2M
Influenza Viral PathogenesisZIAAI000986 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI TAUBENBERGER, JEFFERY · 2009 to 2025
$30.0M
Influenza Viral Pathogenesis Z01AI000986 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI TAUBENBERGER, JEFFERY · 2007 to 2008
$1.9M
Intramural NIH HHS Z01 AI000986
6 · The paper itself

Abstract

In this study, we examined the relationships between anti-influenza virus serum antibody titers, clinical disease, and peripheral blood leukocyte (PBL) global gene expression during presymptomatic, acute, and convalescent illness in 83 participants infected with 2009 pandemic H1N1 virus in a human influenza challenge model. Using traditional statistical and logistic regression modeling approaches, profiles of differentially expressed genes that correlated with active viral shedding, predicted length of viral shedding, and predicted illness severity were identified. These analyses further demonstrated that challenge participants fell into three peripheral blood leukocyte gene expression phenotypes that significantly correlated with different clinical outcomes and prechallenge serum titers of antibodies specific for the viral neuraminidase, hemagglutinin head, and hemagglutinin stalk. Higher prechallenge serum antibody titers were inversely correlated with leukocyte responsiveness in participants with active disease and could mask expression of peripheral blood markers of clinical disease in some participants, including viral shedding and symptom severity. Consequently, preexisting anti-influenza antibodies may modulate PBL gene expression, and this must be taken into consideration in the development and interpretation of peripheral blood diagnostic and prognostic assays of influenza infection.

Indexed as

Acute DiseaseAdolescentAdultAntibodies, ViralConvalescenceCross ProtectionFemaleGene Expression ProfilingHealthy VolunteersHemagglutination Inhibition TestsHemagglutinin Glycoproteins, Influenza VirusHuman ExperimentationHumansInfluenza A Virus, H1N1 SubtypeInfluenza, HumanLeukocytesAntibodies, ViralHemagglutinin Glycoproteins, Influenza VirusNeuraminidaseantibody functiongenomicsHA head antibodiesHA stalk antibodieshost responsehuman challengeimmune markersimmune responseinfluenzamicroarraysNA antibodiesregulation of gene expression

Identifiers

PMID31088926
PMCPMC6520452
OpenAlexW2945680022

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.