Evidence map›Paper›PMID 31088393›Full record

ArticleBMC medical genetics2019

Targeted next generation sequencing in 112 Chinese patients with intellectual disability/developmental delay: novel mutations and candidate gene.

Huifang Yan, Zhen Shi, Ye Wu, Jiangxi Xiao, Qiang Gu, Yanling Yang, Ming Li, Kai Gao, Yinyin Chen, Xiaoping Yang and 5 more

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  3. Article
  4. Review
  5. Article
  6. Article
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  8. Genetics in medicine open · 2024
    Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Whole genome sequencing of 45 Japanese patients with intellectual disability.American journal of medical genetics. Part A · 2021
    Article
  14. Article
  15. Review
  16. Article
  17. Genetic analysis of intellectual disability and autism.Acta bio-medica : Atenei Parmensis · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Huifang YanDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Zhen ShiDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Ye WuDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Jiangxi XiaoDepartment of Radiology, Peking University First Hospital, Beijing, China.
Qiang GuDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Yanling YangDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Ming LiDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Kai GaoDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Yinyin ChenDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Xiaoping YangDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Haoran JiDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Binbin CaoDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Ruoyu DuanDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Yuwu JiangDepartment of Pediatrics, Peking University First Hospital, Beijing, China. jiangyw@263.net.
Jingmin WangDepartment of Pediatrics, Peking University First Hospital, Beijing, China. Wang66jm@163.com.ORCID 0000-0001-5157-7262
Peking University · CNShanxi Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIntellectual disability/developmental delay is a complex condition with extraordinary heterogeneity. A large proportion of patients lacks a specific diagnosis. Next generation sequencing, enabling identification of genetic variations in multiple genes, has become an efficient strategy for genetic analysis in intellectual disability/developmental delay.

methodsClinical data of 112 Chinese families with unexplained intellectual disability/developmental delay was collected. Targeted next generation sequencing of 454 genes related to intellectual disability/developmental delay was performed for all 112 index patients. Patients with promising variants and their other family members underwent Sanger sequencing to validate the authenticity and segregation of the variants.

resultsFourteen promising variants in genes EFNB1, MECP2, ATRX, NAA10, ANKRD11, DHCR7, LAMA1, NFIX, UBE3A, ARID1B and PTPRD were identified in 11 of 112 patients (11/112, 9.82%). Of 14 variants, eight arose de novo, and 13 are novel. Nine patients (9/112, 8.03%) got definite molecular diagnoses. It is the first time to report variants in EFNB1, NAA10, DHCR7, LAMA1 and NFIX in Chinese intellectual disability/developmental delay patients and first report about variants in NAA10 and LAMA1 in affected individuals of Asian ancestry.

conclusionsTargeted next generation sequencing of 454 genes is an effective test strategy for patients with unexplained intellectual disability/developmental delay. Genetic heterogenicity is significant in this Chinese cohort and de novo variants play an important role in the diagnosis. Findings of this study further delineate the corresponding phenotypes, expand the mutation spectrum and support the involvement of PTPRD in the disease.

Indexed as

MutationAdolescentChildChild, PreschoolChinaChromosomes, Human, XDevelopmental DisabilitiesFemaleGenes, DominantGenes, RecessiveGenetic HeterogeneityHigh-Throughput Nucleotide SequencingHumansInfantIntellectual DisabilityMaleDevelopmental delayGenetic diagnosisIntellectual disabilityNext generation sequencingPathogenicity

Identifiers

PMID31088393
PMCPMC6518638
OpenAlexW2946990669

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.