Evidence map›Paper›PMID 31088381›Full record

ArticleBMC gastroenterology2019

Detection of Helicobacter pylori and its virulence genes (cagA, dupA, and vacA) among patients with gastroduodenal diseases in Chris Hani Baragwanath Academic Hospital, South Africa.

Ayodeji Idowu, Asisipho Mzukwa, Ute Harrison, Pia Palamides, Rainer Haas, Melvin Mbao, Razinah Mamdoo, Jonathan Bolon, Tolulope Jolaiya, Stella Smith and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC gastroenterology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 73 citations in OpenAlex.

  1. Biomolecules · 2026
    Review
  2. Article
  3. Article
  4. The Effect ofPathogens (Basel, Switzerland) · 2025
    Article
  5. Prevalence of Helicobacter pylori cagA virulence factor and validation of serological tests in a population from Northeastern Brazil.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2025
    Article
  6. Prevalence of cagA, cagM, vacA and oipA genes in isolates of Helicobacter pylori obtained from hospital patients in Northeast Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  7. Pangenome Analysis ofInternational journal of genomics · 2024
    Article
  8. Article
  9. Article
  10. Pathogens (Basel, Switzerland) · 2023
    Article
  11. Article
  12. Impact ofWorld journal of gastroenterology · 2023
    Article
  13. Frontiers in cellular and infection microbiology · 2023
    Article
  14. Article
  15. Article
  16. Helicobacter pylori: an up-to-date overview on the virulence and pathogenesis mechanisms.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Review
  17. Article
  18. Evaluating CagA and VacA Oncoproteins ofJournal of pharmacy & bioallied sciences · 2021
    Article
  19. Article
  20. Frontiers in microbiology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Ayodeji IdowuDepartment of Biochemistry and Microbiology, University of Fort Hare, Alice, Eastern Cape, 5700, South Africa. dejimicro@yahoo.com.ORCID http://orcid.org/0000-0003-2497-4662
Asisipho MzukwaDepartment of Biochemistry and Microbiology, University of Fort Hare, Alice, Eastern Cape, 5700, South Africa.
Ute HarrisonChair of Medical Microbiology and Hospital Epidemiology, Max von Pettenkofer-Institute, Faculty of Medicine, LMU Munich, Munich, Germany.
Pia PalamidesChair of Medical Microbiology and Hospital Epidemiology, Max von Pettenkofer-Institute, Faculty of Medicine, LMU Munich, Munich, Germany.
Rainer HaasChair of Medical Microbiology and Hospital Epidemiology, Max von Pettenkofer-Institute, Faculty of Medicine, LMU Munich, Munich, Germany.
Melvin MbaoDivision of Gastroenterology, Chris Hani Baragwanath Academic Hospital (CHBAH), Soweto, Johannesburg, 2013, South Africa.
Razinah MamdooDivision of Gastroenterology, Chris Hani Baragwanath Academic Hospital (CHBAH), Soweto, Johannesburg, 2013, South Africa.
Jonathan BolonDivision of Gastroenterology, Chris Hani Baragwanath Academic Hospital (CHBAH), Soweto, Johannesburg, 2013, South Africa.
Tolulope JolaiyaDepartment of Microbiology, University of Lagos, Akoka, Yaba Lagos, Nigeria.
Stella SmithMolecular Biology Department, Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria.
Reidwaan AllyDivision of Gastroenterology, Chris Hani Baragwanath Academic Hospital (CHBAH), Soweto, Johannesburg, 2013, South Africa.
Anna ClarkeDepartment of Biochemistry and Microbiology, University of Fort Hare, Alice, Eastern Cape, 5700, South Africa.
Henry NjomDepartment of Biochemistry and Microbiology, University of Fort Hare, Alice, Eastern Cape, 5700, South Africa.
Chris Hani Baragwanath Hospital · ZAUniversity of Fort Hare · ZALudwig-Maximilians-Universität München · DENigerian Institute of Medical Research · NGUniversity of Lagos · NG

Funding

Deutsche Forschungsgemeinschaft HA2697/18-1
6 · The paper itself

Abstract

backgroundThe global prevalence of H. pylori approaches 50%, with prevalence rates between 20 and 40% in developed countries and up to 90% in Africa and other developing nations of the world. Development of H. pylori-associated diseases is determined by a number of virulence factors. This study aimed at determining the prevalence of H. pylori infections and virulence genes (cagA, dupA, and vacA); the relationship between virulence factors and gastroduodenal diseases among patients.

methodsGastric biopsies were obtained from patients and cultured, DNA was extracted from cultured isolates and biopsies for PCR assay after which samples were investigated using standard laboratory procedures. Data of associated risk factors were obtained with the aid of questionnaires.

resultsOf the 444 participants, H. pylori was detected in 115 (25.9%) from culture analysis and 217 (48.9%) by direct PCR method. Ninety-eight (85.2%) of the culture-positive patients were also detected by PCR giving an overall prevalence of 52.7% (234/444). The highest number of H. pylori isolates 76.9% (180/234) was obtained from patients suffering from pangastritis. The CagA virulence gene was found in 62% (145/234), dupA in 53.4% (125/234) and vacA in 90.6% (212/234). VacA genotype s1 m1 was the most prevalent [56.4% (132)] followed by s2 m2 [11.5% (27)], s2 m1 [10.3% (24)] and [s1 m2 9.4% (22)]. There was a significant association observed in vacA s1 and peptic ulcer disease, as well as vacA s1/m2 and gastric erosion (P < 0.05).

conclusionThe study revealed a significant association between virulence genes and the development of certain forms of gastric infections while the variations in H. pylori detection and the associated risk factors investigated in the study were not significantly related.

Indexed as

AdolescentAdultAgedAged, 80 and overAntigens, BacterialBacterial ProteinsBiopsyDNA, BacterialFemaleGastritisGenotypeHelicobacter InfectionsHelicobacter pyloriHospitals, TeachingHumansMaleAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriDNA, BacterialDupA protein, Helicobacter pyloriVacA protein, Helicobacter pyloriVirulence FactorsAnd vacAcagAdupAH. pyloriPatientsPCR assayPeptic ulcerVirulence genes

Identifiers

PMID31088381
PMCPMC6518451
OpenAlexW2947516234

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.