Evidence map›Paper›PMID 31087453›Full record

ArticleAndrology2019

Identification of testicular cancer driver genes by a cross-species comparative oncology approach.

A Sanchez, L Xu, J L Pierce, J T Lafin, D Abe, A Bagrodia, A L Frazier, J F Amatruda

Open access · greenAbstract readComparative Study
In one paragraph

Article in Andrology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Zebrafish as a model system for studying reproductive diseases.Frontiers in cell and developmental biology · 2024
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

A SanchezDepartments of Pediatrics and Molecular Biology, University of Texas Southwestern Medical, Dallas, TX, USA.
L XuDepartments of Pediatrics and Molecular Biology, University of Texas Southwestern Medical, Dallas, TX, USA.
J L PierceDepartments of Pediatrics and Molecular Biology, University of Texas Southwestern Medical, Dallas, TX, USA.
J T LafinDepartment of Urology, University of Texas Southwestern Medical, Dallas, TX, USA.ORCID 0000-0003-2335-8999
D AbeDepartments of Pediatrics and Molecular Biology, University of Texas Southwestern Medical, Dallas, TX, USA.
A BagrodiaDepartment of Urology, University of Texas Southwestern Medical, Dallas, TX, USA.
A L FrazierDepartment of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Harvard Medical School, Boston, MA, USA.
J F AmatrudaDepartments of Pediatrics and Molecular Biology, University of Texas Southwestern Medical, Dallas, TX, USA.ORCID 0000-0002-9901-2137
The University of Texas Southwestern Medical Center · USHarvard University · US

Funding

Cancer Biology Training GrantT32CA124334 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI SHAY, JERRY WILLIAM · 2007 to 2021
$5.3M
Generation and Rapid Mapping of Low-Penetrance Disease Alleles in ZebrafishR01CA135731 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI AMATRUDA, JAMES F · 2008 to 2012
$1.6M
Assay Validation of a Circulating miRNA Test for Diagnosis and Monitoring of Malignant Germ Cell TumorsUH3CA240688 · NCI · DANA-FARBER CANCER INST · PI FRAZIER, ANNE LINDSAY · 2022 to 2024
$1.1M
Assay Validation of a Circulating miRNA Test for Diagnosis and Monitoring of Malignant Germ Cell TumorsUH2CA240688 · NCI · DANA-FARBER CANCER INST · PI FRAZIER, ANNE LINDSAY · 2019 to 2020
$440k
Cancer Research and Prevention Institute of TexasNCI NIH HHS R01 CA135731NCI NIH HHS T32 CA124334NCI NIH HHS UH2 CA240688NCI NIH HHS UH3 CA240688NIH HHS 5T32CA124334-09NIH HHS RP110394NIH HHS RP170152St. Baldrick's Foundation
6 · The paper itself

Abstract

backgroundGerm cell tumors arise in the testis, ovary, or extragonadal locations and have a wide range of histopathological and clinical presentations. The relative lack of animal models of germ cell tumors has impeded functional assessment of candidate driver genes. Previously, we described the development of testicular germ cell tumors in zebrafish carrying a mutation in bmpr1bb, a BMP family receptor, and demonstrated that human germ cell tumors have defects in BMP signaling.

objectiveTo further credential the zebrafish model for studies of human germ cell tumor, and to elucidate conserved genetic programs underlying the development of germ cell tumor. MATERIALS AND

methodsWe used genetic techniques to ablate the germ cell lineage in developing fish and tested tumors for loss-of-heterozygosity of the wild-type allele of bmpr1bb. We performed comparative gene expression profiling of zebrafish and human germ cell tumors and carried out functional studies of selected genes.

resultsAblation of germ cells completely prevents testis tumor formation in the fish, definitively establishing the germ cell origin of the tumors. Germ cell tumors in bmpr1bb heterozygous mutants retain the wild-type allele, indicating haploinsufficiency of bmpr1bb as the mechanism of tumor formation. Comparison of RNA-Seq and microarray data from human and zebrafish germ cell tumors revealed a unique overlapping signature shared by the zebrafish tumors with human seminomas, yolk sac tumors, and embryonal carcinomas. The most highly conserved gene set in this cross-species analysis included potential driver genes such as JUP, which we show to be essential for germ cell tumor cell growth.

conclusionOur findings highlight the value of cross-species comparative oncology for the identification of candidate human cancer genes.

Indexed as

AnimalsBone Morphogenetic Protein ReceptorsCell Line, TumorGenes, NeoplasmGenomicsHumansNeoplasms, Germ Cell and EmbryonalTesticular NeoplasmsZebrafishBone Morphogenetic Protein Receptorscomparative oncologygerm cell tumorsJUPtesticular cancerzebrafish

Identifiers

PMID31087453
PMCPMC7500825
OpenAlexW2946388606

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.