Evidence map›Paper›PMID 31086990›Full record

ArticleToxicological sciences : an official journal of the Society of Toxicology2019

Gene Expression and DNA Methylation Alterations in the Glycine N-Methyltransferase Gene in Diet-Induced Nonalcoholic Fatty Liver Disease-Associated Carcinogenesis.

Barbara Borowa-Mazgaj, Aline de Conti, Volodymyr Tryndyak, Colleen R Steward, Leandro Jimenez, Stepan Melnyk, Mulugeta Seneshaw, Faridodin Mirshahi, Ivan Rusyn, Frederick A Beland and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Toxicological sciences : an official journal of the Society of Toxicology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Association of Epigenetic Aging Biomarkers With Risk of MASLD-Related HCC.Liver international : official journal of the International Association for the Study of the Liver · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. DNA methylation markers in the detection of hepatocellular carcinoma.European journal of cancer (Oxford, England : 1990) · 2023
    Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. DNA Methylation in Nonalcoholic Fatty Liver Disease.International journal of molecular sciences · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Barbara Borowa-MazgajDivision of Biochemical Toxicology, National Center for Toxicological Research, Jefferson, Arkansas 72079.
Aline de ContiDivision of Biochemical Toxicology, National Center for Toxicological Research, Jefferson, Arkansas 72079.
Volodymyr TryndyakDivision of Biochemical Toxicology, National Center for Toxicological Research, Jefferson, Arkansas 72079.
Colleen R StewardDivision of Biochemical Toxicology, National Center for Toxicological Research, Jefferson, Arkansas 72079.
Leandro JimenezDivision of Biochemical Toxicology, National Center for Toxicological Research, Jefferson, Arkansas 72079.
Stepan MelnykCore Metabolomics Laboratory, Arkansas Children's Research Institute, Little Rock, Arkansas 72202.
Mulugeta SeneshawDepartment of Internal Medicine, Virginia Commonwealth University, Richmond, Virginia 23298.
Faridodin MirshahiDepartment of Internal Medicine, Virginia Commonwealth University, Richmond, Virginia 23298.
Ivan RusynDepartment of Veterinary Integrative Biosciences, Texas A&M University, College Station, Texas 77843.
Frederick A BelandDivision of Biochemical Toxicology, National Center for Toxicological Research, Jefferson, Arkansas 72079.
Arun J SanyalDepartment of Internal Medicine, Virginia Commonwealth University, Richmond, Virginia 23298.
Igor P PogribnyDivision of Biochemical Toxicology, National Center for Toxicological Research, Jefferson, Arkansas 72079.
National Center for Toxicological Research · USVirginia Commonwealth University · USArkansas Children's Hospital · USTexas A&M University · US

Funding

Research Supplement to Promote Diversity in Health Related ResearchUL1TR002649 · NCATS · VIRGINIA COMMONWEALTH UNIVERSITY · PI MOELLER, FREDERICK GERARD · 2018 to 2022
$19.1M
Genes, genomes, and genotoxicity: in vivo epigenetic toxicology of 1,3-butadieneR01ES023195 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CRAWFORD, GREGORY E, FUREY, TERRENCE S. · 2013 to 2016
$2.2M
NCATS NIH HHS UL1 TR002649
6 · The paper itself

Abstract

Nonalcoholic fatty liver disease (NAFLD) is becoming a major etiological risk factor for hepatocellular carcinoma (HCC) in the United States and other Western countries. In this study, we investigated the role of gene-specific promoter cytosine DNA methylation and gene expression alterations in the development of NAFLD-associated HCC in mice using (1) a diet-induced animal model of NAFLD, (2) a Stelic Animal Model of nonalcoholic steatohepatitis-derived HCC, and (3) a choline- and folate-deficient (CFD) diet (CFD model). We found that the development of NAFLD and its progression to HCC was characterized by down-regulation of glycine N-methyltransferase (Gnmt) and this was mediated by progressive Gnmt promoter cytosine DNA hypermethylation. Using a panel of genetically diverse inbred mice, we observed that Gnmt down-regulation was an early event in the pathogenesis of NAFLD and correlated with the extent of the NAFLD-like liver injury. Reduced GNMT expression was also found in human HCC tissue and liver cancer cell lines. In in vitro experiments, we demonstrated that one of the consequences of GNMT inhibition was an increase in genome methylation facilitated by an elevated level of S-adenosyl-L-methionine. Overall, our findings suggest that reduced Gnmt expression caused by promoter hypermethylation is one of the key molecular events in the development of NAFLD-derived HCC and that assessing Gnmt methylation level may be useful for disease stratification.

Indexed as

DNA MethylationGene Expression Regulation, NeoplasticAnimalsCarcinogenesisCarcinoma, HepatocellularGlycine N-MethyltransferaseHep G2 CellsHumansLiver NeoplasmsMaleMiceMice, Inbred C57BLNon-alcoholic Fatty Liver DiseasePromoter Regions, GeneticGlycine N-MethyltransferaseepigeneticsGnmtHCCNAFLDNASH

Identifiers

PMID31086990
PMCPMC6934890
OpenAlexW2945349500

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.