Evidence map›Paper›PMID 31086362›Full record

ArticlePLoS biology2019

Islands of retroelements are major components of Drosophila centromeres.

Ching-Ho Chang, Ankita Chavan, Jason Palladino, Xiaolu Wei, Nuno M C Martins, Bryce Santinello, Chin-Chi Chen, Jelena Erceg, Brian J Beliveau, Chao-Ting Wu and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
33.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 168 citations in OpenAlex.

  1. Cross-species incompatibilities offer new insights into the functional consequences of satellite DNA evolution.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Oocyte Kinetochores at the Nexus of Meiotic Drive and Segregation Fidelity.Advances in experimental medicine and biology · 2026
    Review
  12. Article
  13. Article
  14. The dynamic centromere.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  15. Pervasive suppressors halt the spread of selfishbioRxiv : the preprint server for biology · 2025
    Article
  16. Centromere regulation in the germline and early embryo.Current opinion in genetics & development · 2025
    Review
  17. Article
  18. Centromeres drive and take a break.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  19. Article
  20. CENP-A and centromere evolution in equids.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Ching-Ho ChangDepartment of Biology, University of Rochester; Rochester, New York, United States of America.ORCID 0000-0001-9361-1190
Ankita ChavanDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.
Jason PalladinoDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.ORCID 0000-0003-2520-4117
Xiaolu WeiDepartment of Biomedical Genetics, University of Rochester Medical Center, Rochester, New York, United States of America.ORCID 0000-0001-9952-3757
Nuno M C MartinsDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0003-3953-9313
Bryce SantinelloDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.
Chin-Chi ChenDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.ORCID 0000-0002-8894-5636
Jelena ErcegDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.
Brian J BeliveauWyss Institute for Biologically Inspired Engineering, Harvard Medical School, Boston, Massachusetts, United States of America.
Chao-Ting WuDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0001-5525-871X
Amanda M LarracuenteDepartment of Biology, University of Rochester; Rochester, New York, United States of America.ORCID 0000-0001-5944-5686
Barbara G MelloneDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.ORCID 0000-0002-2785-5119
University of Connecticut · USHarvard University · USUniversity of Rochester · USUniversity of Rochester Medical Center · US

Funding

Culling the human genome of disease variants using ultraconserved elementsR01HD091797 · NICHD · HARVARD MEDICAL SCHOOL · PI WU, CHAO-TING · 2016 to 2020
$5.5M
The inheritance of position: It's not just who you are, it's where you areDP1GM106412 · NIGMS · HARVARD MEDICAL SCHOOL · PI WU, CHAO-TING · 2012 to 2016
$4.2M
The evolutionary and functional genomics of satellite DNAR35GM119515 · NIGMS · UNIVERSITY OF ROCHESTER · PI Amanda Marie Larracuente · 2016 to 2026
$4.0M
Genetic and Epigenetic Determinants of Centromere IdentityR35GM131868 · NIGMS · UNIVERSITY OF CONNECTICUT STORRS · PI BARBARA MELLONE · 2019 to 2026
$3.1M
Technologies for visualizing the genome in situR01GM123289 · NIGMS · HARVARD MEDICAL SCHOOL · PI WU, CHAO-TING · 2017 to 2020
$2.5M
A novel animal model approach to investigate neocentromere formation and inactivaR01GM108829 · NIGMS · UNIVERSITY OF CONNECTICUT STORRS · PI MELLONE, BARBARA · 2014 to 2018
$1.5M
Howard Hughes Medical InstituteNICHD NIH HHS R01 HD091797NIGMS NIH HHS DP1 GM106412NIGMS NIH HHS R01 GM108829NIGMS NIH HHS R01 GM123289NIGMS NIH HHS R35 GM119515NIGMS NIH HHS R35 GM131868
6 · The paper itself

Abstract

Centromeres are essential chromosomal regions that mediate kinetochore assembly and spindle attachments during cell division. Despite their functional conservation, centromeres are among the most rapidly evolving genomic regions and can shape karyotype evolution and speciation across taxa. Although significant progress has been made in identifying centromere-associated proteins, the highly repetitive centromeres of metazoans have been refractory to DNA sequencing and assembly, leaving large gaps in our understanding of their functional organization and evolution. Here, we identify the sequence composition and organization of the centromeres of Drosophila melanogaster by combining long-read sequencing, chromatin immunoprecipitation for the centromeric histone CENP-A, and high-resolution chromatin fiber imaging. Contrary to previous models that heralded satellite repeats as the major functional components, we demonstrate that functional centromeres form on islands of complex DNA sequences enriched in retroelements that are flanked by large arrays of satellite repeats. Each centromere displays distinct size and arrangement of its DNA elements but is similar in composition overall. We discover that a specific retroelement, G2/Jockey-3, is the most highly enriched sequence in CENP-A chromatin and is the only element shared among all centromeres. G2/Jockey-3 is also associated with CENP-A in the sister species D. simulans, revealing an unexpected conservation despite the reported turnover of centromeric satellite DNA. Our work reveals the DNA sequence identity of the active centromeres of a premier model organism and implicates retroelements as conserved features of centromeric DNA.

Indexed as

AnimalsCentromereCentromere Protein AChromatinDNA, SatelliteDNA Transposable ElementsDrosophilaDrosophila ProteinsEmbryo, NonmammalianGenome, InsectRetroelementsTerminal Repeat SequencesCentromere Protein AChromatinCid protein, DrosophilaDNA, SatelliteDNA Transposable ElementsDrosophila ProteinsRetroelements

Identifiers

PMID31086362
PMCPMC6516634
OpenAlexW2949267777

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.