Evidence map›Paper›PMID 31086298›Full record

ReviewNature reviews. Genetics2019

Long-range enhancer-promoter contacts in gene expression control.

Stefan Schoenfelder, Peter Fraser

Abstract readReview
PubMed Publisher
In one paragraph

Review in Nature reviews. Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 683 papers.

0numbers the graph read from it
0cells of the map it votes in
683citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

683 citing papers in PubMed.

  1. Article
  2. The role ofEpigenetics · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. ELF5-Mediated Enhancer-Promoter Interaction Regulates LALBA Expression in Ovine Mammary Gland.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Epigenetic regulation and chromatin organization in cystic fibrosis airways.Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society · 2026
    Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Altered Postnatal Chromatin Development in the Nucleus Accumbens Primes Enduring Stress Sensitivity.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026
    Article

623 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Stefan SchoenfelderNuclear Dynamics Programme, The Babraham Institute, Babraham Research Campus, Cambridge, UK. stefan.schoenfelder@babraham.ac.uk.ORCID http://orcid.org/0000-0002-3200-8133
Peter FraserNuclear Dynamics Programme, The Babraham Institute, Babraham Research Campus, Cambridge, UK.ORCID http://orcid.org/0000-0002-0041-1227

Funding

New automated experimental and computational pipeline for high coverage single-cell Hi-C and its integration with single cell RNA-seq: enabling 4D Nucleomics at single cell resolutionU01HL129971 · NHLBI · FLORIDA STATE UNIVERSITY · PI FRASER, PETER J, TANAY, AMOS · 2015 to 2019
$2.1M
Biotechnology and Biological Sciences Research Council BB/J004480/1Medical Research Council MR/L007150/1Medical Research Council MR/T016787/1NHLBI NIH HHS U01 HL129971
6 · The paper itself

Abstract

Spatiotemporal gene expression programmes are orchestrated by transcriptional enhancers, which are key regulatory DNA elements that engage in physical contacts with their target-gene promoters, often bridging considerable genomic distances. Recent progress in genomics, genome editing and microscopy methodologies have enabled the genome-wide mapping of enhancer-promoter contacts and their functional dissection. In this Review, we discuss novel concepts on how enhancer-promoter interactions are established and maintained, how the 3D architecture of mammalian genomes both facilitates and constrains enhancer-promoter contacts, and the role they play in gene expression control during normal development and disease.

Indexed as

AnimalsEnhancer Elements, GeneticGene EditingGene ExpressionGenomeGenomicsHumansMammalsPromoter Regions, Genetic

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.