Evidence map›Paper›PMID 31086179›Full record

ArticleNature communications2019

EXOSC10 is required for RPA assembly and controlled DNA end resection at DNA double-strand breaks.

Judit Domingo-Prim, Martin Endara-Coll, Franziska Bonath, Sonia Jimeno, Rosario Prados-Carvajal, Marc R Friedländer, Pablo Huertas, Neus Visa

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 104 citations in OpenAlex.

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  16. Mechanisms underlining R-loop biology and implications for human disease.Frontiers in cell and developmental biology · 2025
    Review
  17. Kinome-wide CRISPR-Cas9 screens revealedBiochemistry and biophysics reports · 2024
    Article
  18. Review
  19. Review
  20. Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Judit Domingo-PrimDepartment of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, SE-106 91, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-8839-3261
Martin Endara-CollDepartment of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, SE-106 91, Stockholm, Sweden.
Franziska BonathScience for Life Laboratory, Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, SE-106 91, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-1270-1504
Sonia JimenoCentro Andaluz de Biología Molecular y Medicina Regenerativa-CABIMER, Universidad de Sevilla-CSIC-Universidad Pablo de Olavide, 41092, Sevilla, Spain.
Rosario Prados-CarvajalCentro Andaluz de Biología Molecular y Medicina Regenerativa-CABIMER, Universidad de Sevilla-CSIC-Universidad Pablo de Olavide, 41092, Sevilla, Spain.
Marc R FriedländerScience for Life Laboratory, Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, SE-106 91, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-6577-4363
Pablo HuertasCentro Andaluz de Biología Molecular y Medicina Regenerativa-CABIMER, Universidad de Sevilla-CSIC-Universidad Pablo de Olavide, 41092, Sevilla, Spain.ORCID http://orcid.org/0000-0002-1756-4449
Neus VisaDepartment of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, SE-106 91, Stockholm, Sweden. neus.visa@su.se.ORCID http://orcid.org/0000-0003-3145-3953
Stockholm University · SECentro Andaluz de Biología Molecular y Medicina Regenerativa · ES

Funding

Cancerfonden (Swedish Cancer Society) CAN 2016/460European Molecular Biology Organization (EMBO) STF-7513-2018European Molecular Biology Organization (EMBO) STF-7764-2018Ministerio de Economía y Competitividad (Ministry of Economy and Competitiveness) SAF2016-74855-PVetenskapsrådet (Swedish Research Council) 2015-04553
6 · The paper itself

Abstract

The exosome is a ribonucleolytic complex that plays important roles in RNA metabolism. Here we show that the exosome is necessary for the repair of DNA double-strand breaks (DSBs) in human cells and that RNA clearance is an essential step in homologous recombination. Transcription of DSB-flanking sequences results in the production of damage-induced long non-coding RNAs (dilncRNAs) that engage in DNA-RNA hybrid formation. Depletion of EXOSC10, an exosome catalytic subunit, leads to increased dilncRNA and DNA-RNA hybrid levels. Moreover, the targeting of the ssDNA-binding protein RPA to sites of DNA damage is impaired whereas DNA end resection is hyper-stimulated in EXOSC10-depleted cells. The DNA end resection deregulation is abolished by transcription inhibitors, and RNase H1 overexpression restores the RPA recruitment defect caused by EXOSC10 depletion, which suggests that RNA clearance of newly synthesized dilncRNAs is required for RPA recruitment, controlled DNA end resection and assembly of the homologous recombination machinery.

Indexed as

DNA Breaks, Double-StrandedHomologous RecombinationDNAExoribonucleasesExosome Multienzyme Ribonuclease ComplexExosomesGene Knockdown TechniquesHeLa CellsHumansRad51 RecombinaseReplication Protein ARibonuclease HRNA, Long NoncodingRNA, Small InterferingDNAExoribonucleasesEXOSC10 protein, humanExosome Multienzyme Ribonuclease ComplexRAD51 protein, humanRad51 RecombinaseReplication Protein ARibonuclease Hribonuclease HIRNA, Long NoncodingRNA, Small InterferingRPA1 protein, human

Identifiers

PMID31086179
PMCPMC6513946
OpenAlexW2944698323

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.