Evidence map›Paper›PMID 31086175›Full record

ArticleNature communications2019

PFA ependymoma-associated protein EZHIP inhibits PRC2 activity through a H3 K27M-like mechanism.

Siddhant U Jain, Truman J Do, Peder J Lund, Andrew Q Rashoff, Katharine L Diehl, Marcin Cieslik, Andrea Bajic, Nikoleta Juretic, Shriya Deshmukh, Sriram Venneti and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 140 papers.

0numbers the graph read from it
0cells of the map it votes in
140citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

140 citing papers in PubMed, 206 citations in OpenAlex.

  1. Trial
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  7. Article
  8. Article
  9. Review
  10. Article
  11. A brief history of ependymoma.Neuro-oncology · 2026
    Review
  12. Review
  13. Article
  14. Brain tumor research and treatment · 2026
    Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article

80 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Siddhant U JainDepartment of Biomolecular Chemistry, School of Medicine and Public Health and Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI, 53715, USA.
Truman J DoDepartment of Biomolecular Chemistry, School of Medicine and Public Health and Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI, 53715, USA.ORCID http://orcid.org/0000-0002-4285-1773
Peder J LundDepartment of Biochemistry and Biophysics, and Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Andrew Q RashoffDepartment of Biomolecular Chemistry, School of Medicine and Public Health and Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI, 53715, USA.
Katharine L DiehlDepartment of Chemistry, Princeton University, Princeton, NJ, 08544, USA.
Marcin CieslikDepartment of Pathology, University of Michigan, Ann Arbor, MI, 48104, USA.
Andrea BajicDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.ORCID http://orcid.org/0000-0002-7177-5757
Nikoleta JureticDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Shriya DeshmukhDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Sriram VennetiDepartment of Pathology, University of Michigan, Ann Arbor, MI, 48104, USA.
Tom W MuirDepartment of Chemistry, Princeton University, Princeton, NJ, 08544, USA.
Benjamin A GarciaDepartment of Biochemistry and Biophysics, and Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Nada JabadoDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.ORCID http://orcid.org/0000-0003-2485-3692
Peter W LewisDepartment of Biomolecular Chemistry, School of Medicine and Public Health and Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI, 53715, USA. peter.lewis@wisc.edu.
University of Wisconsin–Madison · USMcGill University Health Centre · CAPrinceton University · USUniversity of Michigan · USUniversity of Pennsylvania · USMcGill University · CA

Funding

Shared Resources Core 2: Quantitative Proteomics CoreP01CA196539 · NCI · ROCKEFELLER UNIVERSITY · PI LEWIS, PETER W · 2015 to 2024
$17.6M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007133 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PERNA, NICOLE T · 1985 to 2023
$16.5M
IMMUNOBIOLOGY OF NORMAL AND NEOPLASTIC LYMPHOCYTEST32CA009140 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Malay Haldar, WARREN S PEAR · 1985 to 2026
$16.1M
INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
Integrated Training For Physician-ScientistsT32GM140935 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Anna Huttenlocher, Jeniel E Nett · 2021 to 2026
$6.5M
Viral modulation of epitranscriptomic mechanismsR01AI118891 · NIAID · WASHINGTON UNIVERSITY · PI GARCIA, BENJAMIN A, WEITZMAN, MATTHEW D. · 2015 to 2025
$5.4M
Novel Methodology for Quantitative High-throughput Cancer EpigeneticsDP2OD007447 · OD · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2010 to 2010
$2.4M
Understanding the Role of Combinatorial Histone PTM PatternsR01GM110174 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2014 to 2017
$1.3M
Unraveling glutamine metabolism in gliomas by PET imaging and biochemical methodsK08CA181475 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI VENNETI, SRIRAM · 2014 to 2018
$701k
NCI NIH HHS K08 CA181475NCI NIH HHS P01 CA196539NCI NIH HHS T32 CA009140NIAID NIH HHS R01 AI118891NIGMS NIH HHS R01 GM110174NIGMS NIH HHS T32 GM007133NIGMS NIH HHS T32 GM008692NIGMS NIH HHS T32 GM140935NIH HHS DP2 OD007447
6 · The paper itself

Abstract

Posterior fossa type A (PFA) ependymomas exhibit very low H3K27 methylation and express high levels of EZHIP (Enhancer of Zeste Homologs Inhibitory Protein, also termed CXORF67). Here we find that a conserved sequence in EZHIP is necessary and sufficient to inhibit PRC2 catalytic activity in vitro and in vivo. EZHIP directly contacts the active site of the EZH2 subunit in a mechanism similar to the H3 K27M oncohistone. Furthermore, expression of H3 K27M or EZHIP in cells promotes similar chromatin profiles: loss of broad H3K27me3 domains, but retention of H3K27me3 at CpG islands. We find that H3K27me3-mediated allosteric activation of PRC2 substantially increases the inhibition potential of EZHIP and H3 K27M, providing a mechanism to explain the observed loss of H3K27me3 spreading in tumors. Our data indicate that PFA ependymoma and DIPG are driven in part by the action of peptidyl PRC2 inhibitors, the K27M oncohistone and the EZHIP 'oncohistone-mimic', that dysregulate gene silencing to promote tumorigenesis.

Indexed as

AnimalsBrain NeoplasmsCarcinogenesisCell Line, TumorChromatinCpG IslandsCranial Fossa, PosteriorDatasets as TopicEmbryo, MammalianEpendymomaFibroblastsGene Expression Regulation, NeoplasticGene SilencingGliomaHEK293 CellsHistonesAU022751 protein, mouseChromatinEZHIP protein, humanHistonesOncogene ProteinsPolycomb Repressive Complex 2Recombinant Proteins

Identifiers

PMID31086175
PMCPMC6513997
OpenAlexW2924177262

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.