Evidence map›Paper›PMID 31086084›Full record

ReviewMicroorganisms2019

Advances in Chemical and Biological Methods to Identify Microorganisms-From Past to Present.

Ricardo Franco-Duarte, Lucia Černáková, Snehal Kadam, Karishma S Kaushik, Bahare Salehi, Antonio Bevilacqua, Maria Rosaria Corbo, Hubert Antolak, Katarzyna Dybka-Stępień, Martyna Leszczewicz and 6 more

Abstract readReview
In one paragraph

Review in Microorganisms, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 183 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
183citing papers in PubMed, 5 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

183 citing papers in PubMed, 5 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Rapid On-Site Detection ofFoods (Basel, Switzerland) · 2026
    Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Review of the Microbial Spectrum of Mixed Respiratory Fungal Infections.Journal of epidemiology and global health · 2026
    Review
  20. Review

123 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Ricardo Franco-DuarteCBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, 4710-057 Braga, Portugal. ricardofrancoduarte@gmail.com.
Lucia ČernákováDepartment of Microbiology and Virology, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovičova 6, 842 15 Bratislava, Slovakia. lucia.cernakova@uniba.sk.
Snehal KadamRamalingaswami Re-entry Fellowship, Department of Biotechnology, Government of India, India. snehalgkad@gmail.com.
Karishma S KaushikRamalingaswami Re-entry Fellowship, Department of Biotechnology, Government of India, India. karishmaskaushik@gmail.com.
Bahare SalehiStudent Research Committee, School of Medicine, Bam University of Medical Sciences, Bam 14665-354, Iran. bahar.salehi007@gmail.com.
Antonio BevilacquaDepartment of the Science of Agriculture, Food and Environment, University of Foggia, 71121 Foggia, Italy. antonio.bevilacqua@unifg.it.
Maria Rosaria CorboDepartment of the Science of Agriculture, Food and Environment, University of Foggia, 71121 Foggia, Italy. mariarosaria.corbo@unifg.it.
Hubert AntolakInstitute of Fermentation Technology and Microbiology, Department of Biotechnology and Food Science, Lodz University of Technology, Wolczanska 171/173, 90-924 Lodz, Poland. hubert.antolak@p.lodz.pl.
Katarzyna Dybka-StępieńInstitute of Fermentation Technology and Microbiology, Department of Biotechnology and Food Science, Lodz University of Technology, Wolczanska 171/173, 90-924 Lodz, Poland. katarzyna.dybka@p.lodz.pl.
Martyna LeszczewiczLaboratory of Industrial Biotechnology, Bionanopark Ltd, Dubois 114/116, 93-465 Lodz, Poland. m.leszczewicz@bionanopark.pl.
Saulo Relison TintinoLaboratory of Microbiology and Molecular Biology (LMBM), Department of Biological Chemistry/CCBS/URCA, 63105-000 Crato, Brazil. saulorelison@gmail.com.
Veruska Cintia Alexandrino de SouzaDepartamento of Microbiology, Instituto Aggeu Magalhães/Fiocruz, Recife 50670-420, Brazil. veruska.cintia02@hotmail.com.
Javad Sharifi-RadZabol Medicinal Plants Research Center, Zabol University of Medical Sciences, Zabol 61615-585, Iran. javad.sharifirad@gmail.com.
Henrique Douglas Melo CoutinhoLaboratory of Microbiology and Molecular Biology (LMBM), Department of Biological Chemistry/CCBS/URCA, 63105-000 Crato, Brazil. hdmcoutinho@gmail.com.
Natália MartinsFaculty of Medicine, University of Porto, Alameda Professor Hernâni Monteiro, 4200-319 Porto, Portugal. ncmartins@med.up.pt.
Célia F RodriguesLEPABE⁻Dep. of Chemical Engineering, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, s/n, 4200-465 Porto, Portugal. c.fortunae@gmail.com.

Funding

Fundação para a Ciência e a Tecnologia UID/EQU/00511/2019
6 · The paper itself

Abstract

Fast detection and identification of microorganisms is a challenging and significant feature from industry to medicine. Standard approaches are known to be very time-consuming and labor-intensive (e.g., culture media and biochemical tests). Conversely, screening techniques demand a quick and low-cost grouping of bacterial/fungal isolates and current analysis call for broad reports of microorganisms, involving the application of molecular techniques (e.g., 16S ribosomal RNA gene sequencing based on polymerase chain reaction). The goal of this review is to present the past and the present methods of detection and identification of microorganisms, and to discuss their advantages and their limitations.

Indexed as

chromogenic mediaDNA fingerprintingidentification methodsMALDI-TOFmicroscopy techniquesPCRRAPD PCRreal-time PCRWGS

Identifiers

PMID31086084
PMCPMC6560418

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.