Evidence map›Paper›PMID 31086037›Full record

ArticleMolecules (Basel, Switzerland)2019

Autophagy-Related Proteins GABARAP and LC3B Label Structures of Similar Size but Different Shape in Super-Resolution Imaging.

Iman Abdollahzadeh, Johnny Hendriks, Julia L Sanwald, Indra M Simons, Silke Hoffmann, Oliver H Weiergräber, Dieter Willbold, Thomas Gensch

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Iman AbdollahzadehInstitute of Complex Systems 4 (ICS-4, Cellular Biophysics), Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Straße, 52428 Jülich, Germany. i.abdollahzadeh@fz-juelich.de.ORCID 0000-0002-2677-0535
Johnny HendriksInstitute of Complex Systems 4 (ICS-4, Cellular Biophysics), Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Straße, 52428 Jülich, Germany. jhendriks@upcmail.nl.
Julia L SanwaldInstitut für Physikalische Biologie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany. julia.sanwald@uni-duesseldorf.de.
Indra M SimonsInstitut für Physikalische Biologie, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany. indra.simons@uni-duesseldorf.de.ORCID 0000-0003-3961-3181
Silke HoffmannInstitute of Complex Systems 6 (ICS-6, Structural Biochemistry), Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Straße, 52428 Jülich, Germany. si.hoffmann@fz-juelich.de.
Oliver H WeiergräberInstitute of Complex Systems 6 (ICS-6, Structural Biochemistry), Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Straße, 52428 Jülich, Germany. o.h.weiergraeber@fz-juelich.de.
Dieter WillboldInstitute of Complex Systems 6 (ICS-6, Structural Biochemistry), Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Straße, 52428 Jülich, Germany. d.willbold@fz-juelich.de.ORCID 0000-0002-0065-7366
Thomas GenschInstitute of Complex Systems 4 (ICS-4, Cellular Biophysics), Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Straße, 52428 Jülich, Germany. t.gensch@fz-juelich.de.ORCID 0000-0002-3903-4705

Funding

Deutsche Forschungsgemeinschaft 267205415Forschungszentrum Jülich Vorstandsdoktorandenprogramm
6 · The paper itself

Abstract

Subcellular structures containing autophagy-related proteins of the Atg8 protein family have been investigated with conventional wide-field fluorescence and single molecule localisation microscopy. Fusion proteins of GABARAP and LC3B, respectively, with EYFP were overexpressed in HEK293 cells. While size distributions of structures labelled by the two proteins were found to be similar, shape distributions appeared quite disparate, with EYFP-GABARAP favouring circular structures and elliptical structures being dominant for EYFP-LC3B. The latter also featured a nearly doubled fraction of U-shape structures. The experimental results point towards highly differential localisation of the two proteins, which appear to label structures representing distinct stages or even specific channels of vesicular trafficking pathways. Our data also demonstrate that the application of super-resolution techniques expands the possibilities of fluorescence-based methods in autophagy studies and in some cases can rectify conclusions obtained from conventional fluorescence microscopy with diffraction-limited resolution.

Indexed as

Adaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsHEK293 CellsHumansMicroscopyMicrotubule-Associated ProteinsAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsGABARAP protein, humanMAP1LC3B protein, humanMicrotubule-Associated ProteinsAtg8autophagyEYFP blinkingGABARAPLC3Bshape distributionsingle molecule localisation microscopySMLMsuper-resolution

Identifiers

PMID31086037
PMCPMC6539863

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.