Evidence map›Paper›PMID 31085678›Full record

ArticleJournal of the American Society of Nephrology : JASN2019

Exome-Based Rare-Variant Analyses in CKD.

Sophia Cameron-Christie, Charles J Wolock, Emily Groopman, Slavé Petrovski, Sitharthan Kamalakaran, Gundula Povysil, Dimitrios Vitsios, Mengqi Zhang, Jan Fleckner, Ruth E March and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 57 citations in OpenAlex.

  1. Trial
  2. Article
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  4. Article
  5. Article
  6. Defining Risk in APOL1-Associated Kidney Disease: The Story is Evolving!American journal of kidney diseases : the official journal of the National Kidney Foundation · 2024
    Article
  7. Article
  8. Article
  9. AbioRxiv : the preprint server for biology · 2024
    Article
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  14. Article
  15. Observational
  16. Article
  17. Genome-wide Enrichment ofAmerican journal of respiratory and critical care medicine · 2022
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 3 countries.

Sophia Cameron-ChristieAstraZeneca Centre for Genomics Research, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Cambridge, UK.
Charles J WolockDepartment of Genetics and Development and.
Emily GroopmanDivision of Nephrology, Department of Medicine, Columbia University, New York, New York.
Slavé PetrovskiAstraZeneca Centre for Genomics Research, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Cambridge, UK.
Sitharthan KamalakaranDepartment of Genetics and Development and.
Gundula PovysilAstraZeneca Centre for Genomics Research, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Cambridge, UK.
Dimitrios VitsiosAstraZeneca Centre for Genomics Research, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Cambridge, UK.
Mengqi ZhangInstitute for Genomic Medicine, Columbia University Medical Center, New York, New York.
Jan FlecknerAstraZeneca Centre for Genomics Research, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Cambridge, UK.
Ruth E MarchPrecision Medicine, R&D Oncology, AstraZeneca, Cambridge, UK.
Sahar GelfmanDepartment of Genetics and Development and.
Maddalena MarasaDivision of Nephrology, Department of Medicine, Columbia University, New York, New York.ORCID 0000-0003-0712-2329
Yifu LiDivision of Nephrology, Department of Medicine, Columbia University, New York, New York.
Simone Sanna-CherchiDivision of Nephrology, Department of Medicine, Columbia University, New York, New York.
Krzysztof KirylukDivision of Nephrology, Department of Medicine, Columbia University, New York, New York.
Andrew S AllenInstitute for Genomic Medicine, Columbia University Medical Center, New York, New York.
Bengt C FellströmDepartment of Medical Sciences, Uppsala University Hospital, Uppsala, Sweden; and.
Carolina HaefligerAstraZeneca Centre for Genomics Research, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Cambridge, UK.
Adam PlattAstraZeneca Centre for Genomics Research, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Cambridge, UK; ag2239@cumc.columbia.edu dg2885@cumc.columbia.edu.
David B GoldsteinAstraZeneca Centre for Genomics Research, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Cambridge, UK; ag2239@cumc.columbia.edu dg2885@cumc.columbia.edu.
Ali G GharaviDivision of Nephrology, Department of Medicine, Columbia University, New York, New York; ag2239@cumc.columbia.edu dg2885@cumc.columbia.edu.
AstraZeneca (United Kingdom) · GBColumbia University · USDuke University · USColumbia University Irving Medical Center · USUppsala University Hospital · SE

Funding

Genomics of mammalian posterior urethral valvesR01DK115574 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SANNA-CHERCHI, SIMONE · 2017 to 2021
$2.9M
Genetics of Congenital Obstructive UropathyR01DK103184 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SANNA-CHERCHI, SIMONE · 2014 to 2018
$2.3M
Ancestry, Genetic Risk and Health Disparities in Immune-Mediated NephritisR01MD009223 · NIMHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BOMBACK, ANDREW STEPHEN, GHARAVI, ALI G · 2014 to 2018
$2.2M
Utility of Genomic Diagnostics for Chronic Kidney DiseaseF30DK116473 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GROOPMAN, EMILY EVE · 2017 to 2021
$133k
NIDDK NIH HHS F30 DK116473NIDDK NIH HHS R01 DK103184NIDDK NIH HHS R01 DK115574NIMHD NIH HHS R01 MD009223
6 · The paper itself

Abstract

backgroundStudies have identified many common genetic associations that influence renal function and all-cause CKD, but these explain only a small fraction of variance in these traits. The contribution of rare variants has not been systematically examined.

methodsWe performed exome sequencing of 3150 individuals, who collectively encompassed diverse CKD subtypes, and 9563 controls. To detect causal genes and evaluate the contribution of rare variants we used collapsing analysis, in which we compared the proportion of cases and controls carrying rare variants per gene.

resultsThe analyses captured five established monogenic causes of CKD: variants in

conclusionsThis study demonstrates that rare-variant collapsing analyses can validate known genes and identify candidate genes and modifiers for kidney disease. In so doing, these findings provide a motivation for larger-scale investigation of rare-variant risk contributions across major clinical CKD categories.

Indexed as

Exome SequencingCase-Control StudiesCollagen Type IVFemaleGenetic VariationHumansMalePrognosisProtein Kinase D2Protein KinasesReference ValuesRenal Insufficiency, ChronicTRPP Cation ChannelsCOL4A4 protein, humanCollagen Type IVProtein Kinase D2Protein KinasesTRPP Cation Channelsgenetic renal diseasehuman geneticsmolecular genetics

Identifiers

PMID31085678
PMCPMC6551770
OpenAlexW2946499372

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.