Evidence map›Paper›PMID 31084903›Full record

ArticleBiophysical journal2019

Search and Capture Efficiency of Dynamic Microtubules for Centrosome Relocation during IS Formation.

Apurba Sarkar, Heiko Rieger, Raja Paul

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In one paragraph

Article in Biophysical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Apurba SarkarSchool of Mathematical & Computational Sciences, Indian Association for the Cultivation of Science, Kolkata, West Bengal, India. Electronic address: sspas2@iacs.res.in.
Heiko RiegerDepartment of Theoretical Physics and Center for Biophysics, Saarland University, Saarbrücken, Germany. Electronic address: h.rieger@mx.uni-saarland.de.
Raja PaulSchool of Mathematical & Computational Sciences, Indian Association for the Cultivation of Science, Kolkata, West Bengal, India. Electronic address: raja.paul@iacs.res.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Upon contact with antigen-presenting cells, cytotoxic T lymphocytes (T cells) establish a highly organized contact zone denoted as the immunological synapse (IS). The formation of the IS implies relocation of the microtubule organizing center (MTOC) toward the contact zone, which necessitates a proper connection between the MTOC and the IS via dynamic microtubules (MTs). The efficiency of the MTs finding the IS within the relevant timescale is, however, still illusive. We investigate how MTs search the three-dimensional constrained cellular volume for the IS and bind upon encounter to dynein anchored at the IS cortex. The search efficiency is estimated by calculating the time required for the MTs to reach the dynein-enriched region of the IS. In this study, we develop simple mathematical and numerical models incorporating relevant components of a cell and propose an optimal search strategy. Using the mathematical model, we have quantified the average search time for a wide range of model parameters and proposed an optimized set of values leading to the minimal capture time. Our results show that search times are minimal when the IS formed at the nearest or at the farthest sites on the cell surface with respect to the perinuclear MTOC. The search time increases monotonically away from these two specific sites and is maximal at an intermediate position near the equator of the cell. We observed that search time strongly depends on the number of searching MTs and distance of the MTOC from the nuclear surface.

Indexed as

Models, BiologicalCentrosomeMicrotubulesStochastic ProcessesSynapses

Identifiers

PMID31084903
PMCPMC6554458

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.