Evidence map›Paper›PMID 31081752›Full record

ArticleeLife2019

Plant-necrotroph co-transcriptome networks illuminate a metabolic battlefield.

Wei Zhang, Jason A Corwin, Daniel Harrison Copeland, Julie Feusier, Robert Eshbaugh, David E Cook, Suzi Atwell, Daniel J Kliebenstein

Abstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Combined generalist and host-specific transcriptional strategies enable host generalism in the fungal pathogenProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. A multiplant transcriptomic atlas reveals conserved and lineage-specific defense architectures in response toProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Review
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  12. Review
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  14. Article
  15. Functional annotation and comparative analysis of fourSaudi journal of biological sciences · 2023
    Article
  16. Frontiers in plant science · 2023
    Article
  17. A Practical Guide to Inferring Multi-Omics Networks in Plant Systems.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Wei ZhangDepartment of Plant Pathology, Kansas State University, Manhattan, United States.ORCID 0000-0002-5092-643X
Jason A CorwinDepartment of Ecology and Evolution Biology, University of Colorado, Boulder, United States.
Daniel Harrison CopelandDepartment of Plant Sciences, University of California, Davis, Davis, United States.ORCID 0000-0002-2206-9127
Julie FeusierDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Robert EshbaughDepartment of Plant Sciences, University of California, Davis, Davis, United States.
David E CookDepartment of Plant Pathology, Kansas State University, Manhattan, United States.ORCID 0000-0002-2719-4701
Suzi AtwellDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Daniel J KliebensteinDepartment of Plant Sciences, University of California, Davis, Davis, United States.ORCID 0000-0001-5759-3175

Funding

China Scholarship Council 20130624Danish National Research Foundation DNRF99National Science Foundation IOS 1339125U.S. Department of Agriculture Hatch project number CA-D-PLS-7033-H
6 · The paper itself

Abstract

A central goal of studying host-pathogen interaction is to understand how host and pathogen manipulate each other to promote their own fitness in a pathosystem. Co-transcriptomic approaches can simultaneously analyze dual transcriptomes during infection and provide a systematic map of the cross-kingdom communication between two species. Here we used the Arabidopsis-

Indexed as

ArabidopsisArabidopsis ProteinsBotrytisCyclopentanesFungal ProteinsGene Expression Regulation, FungalGene Expression Regulation, PlantHost-Pathogen InteractionsInfectionsOxylipinsPlant DiseasesPlant LeavesSalicylic AcidTranscriptomeArabidopsis ProteinsCyclopentanesFungal Proteinsjasmonic acidOxylipinsSalicylic AcidArabidopsisA. thalianaBotrytis cinereaco-transcriptomegene co-expression networkhost-pathogen Interactionpathosystemplant biology

Identifiers

PMID31081752
PMCPMC6557632

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.