Evidence map›Paper›PMID 31081027›Full record

ArticleNucleic acids research2019

Chromatin condensation fluctuations rather than steady-state predict chromatin accessibility.

Nicolas Audugé, Sergi Padilla-Parra, Marc Tramier, Nicolas Borghi, Maïté Coppey-Moisan

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Phase-Sensitive Fluorescence Image Correlation Spectroscopy.International journal of molecular sciences · 2024
    Article
  5. Article
  6. Multi-Scale Imaging of the Dynamic Organization of Chromatin.International journal of molecular sciences · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Contribution of advanced fluorescence nano microscopy towards revealing mitotic chromosome structure.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Review
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Nicolas AudugéInstitut Jacques Monod UMR 7592, Université de Paris - Centre National de la Recherche Scientifique, Paris, France.
Sergi Padilla-ParraInstitut Jacques Monod UMR 7592, Université de Paris - Centre National de la Recherche Scientifique, Paris, France.
Marc TramierInstitut Jacques Monod UMR 7592, Université de Paris - Centre National de la Recherche Scientifique, Paris, France.
Nicolas BorghiInstitut Jacques Monod UMR 7592, Université de Paris - Centre National de la Recherche Scientifique, Paris, France.
Maïté Coppey-MoisanInstitut Jacques Monod UMR 7592, Université de Paris - Centre National de la Recherche Scientifique, Paris, France.
Université Paris Cité · FRCentre National de la Recherche Scientifique · FRIkerbasque · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromatin accessibility to protein factors is critical for genome activities. However, the dynamic properties of chromatin higher-order structures that regulate its accessibility are poorly understood. Here, we took advantage of the microenvironment sensitivity of the fluorescence lifetime of EGFP-H4 histone incorporated in chromatin to map in the nucleus of live cells the dynamics of chromatin condensation and its direct interaction with a tail acetylation recognition domain (the double bromodomain module of human TAFII250, dBD). We reveal chromatin condensation fluctuations supported by mechanisms fundamentally distinct from that of condensation. Fluctuations are spontaneous, yet their amplitudes are affected by their sub-nuclear localization and by distinct and competing mechanisms dependent on histone acetylation, ATP and both. Moreover, we show that accessibility of acetylated histone H4 to dBD is not restricted by chromatin condensation nor predicted by acetylation, rather, it is predicted by chromatin condensation fluctuations.

Indexed as

AcetylationAdenosine TriphosphateChromatinFluorescent DyesGreen Fluorescent ProteinsHEK293 CellsHistonesHumansTATA-Binding Protein Associated FactorsAdenosine TriphosphateChromatinenhanced green fluorescent proteinFluorescent DyesGreen Fluorescent ProteinsHistonesTATA-Binding Protein Associated Factors

Identifiers

PMID31081027
PMCPMC6614833
OpenAlexW2951793490

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.