Evidence map›Paper›PMID 31080578›Full record

ArticleCell & bioscience2019

Impact of SNPs interplay across the locus of

Namarta Kalia, Jatinder Singh, Sujata Sharma, Manpreet Kaur

Open access · goldAbstract read
In one paragraph

Article in Cell & bioscience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Namarta Kalia1Department of Molecular Biology & Biochemistry, Guru Nanak Dev University, Amritsar, India.
Jatinder Singh1Department of Molecular Biology & Biochemistry, Guru Nanak Dev University, Amritsar, India.
Sujata Sharma2Department of Obstetrics & Gynaecology, Bebe Nanki Mother and Child Care Centre, Government Medical College, Amritsar, India.
Manpreet Kaur3Department of Human Genetics, Guru Nanak Dev University, Amritsar, India.
Guru Nanak Dev University · INGovernment Medical College, Amritsar · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHuman mannose binding lectin (MBL) and dendritic cell-associated C-type lectin-1 (Dectin-1) are the two prototypical PRRs of innate immunity, whose direct role in recurrent vulvovaginal infections (RVVI) defense has been defined. Previously, MBL insufficiency was proposed as a possible risk factor for the rapid progression of RVVI while, Dectin-1 was found to be playing an active role in the defense. However, the complete genetic bases for the observed low MBL levels are still lacking as our previous studies in harmony with others demonstrated the un-expected genotype-phenotype patterns. This suggested the presence of unidentified regulatory variants that may modulate sMBL levels and risk of RVVI. Therefore, the present study was designed for more inclusive locus-wide

methodsThe present study has extended the previous findings by investigating (1) the role of chosen additional SNPs falling in the 5' near region relating to sMBL levels and RVVI susceptibility, using polymerase chain reaction-restriction fragment length polymorphism, (2) interactions among SNPs within gene by comprehensive locus-wide haplotype analyses of two

resultsrs11003124

conclusionsThe study presented a low-cost reproducible screening design for additional 5' variants i.e. rs11003124, rs7084554, rs36014597 and rs11003123 of

Indexed as

3′ UTR SNPAdditional 5′ variantsGene–gene interactionHaplotypeInnate immunityMultifactor dimensionality reduction (MDR)Reproductive infectious diseases

Identifiers

PMID31080578
PMCPMC6505208
OpenAlexW2947776125

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.