Evidence map›Paper›PMID 31080080›Full record

ArticleCurrent biology : CB2019

Origin of a Core Bacterial Gene via Co-option and Detoxification of a Phage Lysin.

Amelia M Randich, David T Kysela, Cécile Morlot, Yves V Brun

Open access · bronzeAbstract read
In one paragraph

Article in Current biology : CB, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Imported, not invented, genes prevail amongProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Crystal structure of the engineered endolysin mtEC340M.Acta crystallographica. Section F, Structural biology communications · 2023
    Article
  10. Characterization of a lyticFrontiers in microbiology · 2023
    Article
  11. Wild-typeFrontiers in microbiology · 2023
    Article
  12. Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Amelia M RandichDepartment of Biology, Indiana University, 1001 E. 3rd Street, Bloomington, IN 47405, USA.
David T KyselaDepartment of Biology, Indiana University, 1001 E. 3rd Street, Bloomington, IN 47405, USA; Faculté de Médecine, Département de Microbiologie, infectiologie et immunologie, Université de Montréal, C.P. 6128, Succursale Centre-ville, Montréal, QC H3C 3J7, Canada.
Cécile MorlotUniv. Grenoble Alpes, CNRS, CEA, IBS, 38000 Grenoble, France. Electronic address: cecile.morlot@ibs.fr.
Yves V BrunDepartment of Biology, Indiana University, 1001 E. 3rd Street, Bloomington, IN 47405, USA; Faculté de Médecine, Département de Microbiologie, infectiologie et immunologie, Université de Montréal, C.P. 6128, Succursale Centre-ville, Montréal, QC H3C 3J7, Canada. Electronic address: yves.brun@umontreal.ca.
Université de Montréal · CACEA Grenoble · FRIndiana University Bloomington · US

Funding

GLOBAL CONTROL OF DIFFERENTIATION IN CAULOBACTERR01GM051986 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BRUN, YVES V · 1995 to 2016
$6.0M
Bacterial Subcellular Organization and its Impact on Growth, Development, Aging, and Surface AdhesionR35GM122556 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BRUN, YVES V · 2017 to 2019
$1.6M
Mechanisms and Evolution of Bacterial MorphologyF32GM112362 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI RANDICH, AMELIA M · 2014 to 2017
$159k
NIGMS NIH HHS F32 GM112362NIGMS NIH HHS R01 GM051986NIGMS NIH HHS R35 GM122556
6 · The paper itself

Abstract

Temperate phages constitute a potentially beneficial genetic reservoir for bacterial innovation despite being selfish entities encoding an infection cycle inherently at odds with bacterial fitness. These phages integrate their genomes into the bacterial host during infection, donating new but deleterious genetic material: the phage genome encodes toxic genes, such as lysins, that kill the bacterium during the phage infection cycle. Remarkably, some bacteria have exploited the destructive properties of phage genes for their own benefit by co-opting them as toxins for functions related to bacterial warfare, virulence, and secretion. However, do toxic phage genes ever become raw material for functional innovation? Here, we report on a toxic phage gene whose product has lost its toxicity and has become a domain of a core cellular factor, SpmX, throughout the bacterial order Caulobacterales. Using a combination of phylogenetics, bioinformatics, structural biology, cell biology, and biochemistry, we have investigated the origin and function of SpmX and determined that its occurrence is the result of the detoxification of a phage peptidoglycan hydrolase gene. We show that the retained, attenuated activity of the phage-derived domain plays an important role in proper cell morphology and developmental regulation in representatives of this large bacterial clade. To our knowledge, this is the first observation of a phage gene domestication event in which a toxic phage gene has been co-opted for core cellular function at the root of a large bacterial clade.

Indexed as

Genes, BacterialAlphaproteobacteriaBacteriophagesEvolution, MolecularViral ProteinsViral ProteinsAlphaproteobacteriaAsticcacaulisbacterial evolutionCaulobacterGH24 lysozymeprophage domestication

Identifiers

PMID31080080
PMCPMC6594375
OpenAlexW2943882030

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.