Evidence map›Paper›PMID 31078970›Full record

ArticleJournal of the mechanical behavior of biomedical materials2019

Bayesian inference of constitutive model parameters from uncertain uniaxial experiments on murine tendons.

Akinjide R Akintunde, Kristin S Miller, Daniele E Schiavazzi

Open access · greenAbstract read
In one paragraph

Article in Journal of the mechanical behavior of biomedical materials, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

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  6. A computational bio-chemo-mechanical model of in vivo tissue-engineered vascular graft development.Integrative biology : quantitative biosciences from nano to macro · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Akinjide R AkintundeDepartment of Biomedical Engineering, Tulane University, New Orleans, USA.
Kristin S MillerDepartment of Biomedical Engineering, Tulane University, New Orleans, USA.
Daniele E SchiavazziDepartment of Applied and Computational Mathematics and Statistics, University of NotreDame, Notre Dame, USA. Electronic address: dschiavazzi@nd.edu.
Tulane University · USUniversity of Notre Dame · US

Funding

The role of the CMV-associated reactive oxygen species in age-relatedP20GM103629 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI JAZWINSKI, S MICHAL · 2012 to 2021
$22.4M
Enabling reliable cardiovascular simulations via uncertainty quantificationR01EB018302 · NIBIB · STANFORD UNIVERSITY · PI MARSDEN, ALISON L · 2016 to 2019
$1.7M
NIBIB NIH HHS R01 EB018302NIGMS NIH HHS P20 GM103629
6 · The paper itself

Abstract

Constitutive models for biological tissue are typically formulated as a mixture of constituents and the overall response is then assembled by superposition or compatibility. This ensures the stress response of the biological tissue to be in the range of a given constitutive relationship, guaranteeing that at least one parameter combination exists so that an experimental response can be sufficiently well captured. Another, perhaps more challenging, problem is to use constitutive models as a proxy to infer the structure/function of a biological tissue from experiments. In other words, we determine the optimal set of parameters by solving an inverse problem and use these parameters to infer the integrity of the tissue constituents. In previous studies, we focused on the mechanical stress-stretch response of the murine patellar tendon at various age and healing timepoints and solved the inverse problem using three constitutive models, i.e., the Freed-Rajagopal, Gasser-Ogden-Holzapfel and Shearer in order of increasing microstructural detail. Herein, we extend this work by adopting a Bayesian perspective on parameter estimation and implement the constitutive relations in the tulip library for uncertainty analysis, critically analyzing parameter marginals, correlations, identifiability and sensitivity. Our results show the importance of investigating the variability of parameter estimates and that results from optimization may be misleading, particularly for models with many parameters inferred from limited experimental evidence. In our study, we show that different age and healing conditions do not correspond to statistically significant separation among the Gasser-Ogden-Holzapfel and Shearer model parameters, while the phenomenological Freed-Rajagopal model is instead characterized by better indentifiability and parameter learning. Use of the complete experimental observations rather than averaged stress-stretch responses appears to positively constrain inference and results appear to be invariant with respect to the scaling of the experimental uncertainty.

Indexed as

Mechanical PhenomenaUncertaintyAgingAnimalsBayes TheoremBiomechanical PhenomenaMiceTendonsBayesian inferenceConstitutive models for murine patellar tendonsParameter sensitivity and identifiabilityUncertainty quantification

Identifiers

PMID31078970
PMCPMC6561498
OpenAlexW2942924048

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.