Evidence map›Paper›PMID 31077681›Full record

ArticleJournal of theoretical biology2019

Modelling bistable tumour population dynamics to design effective treatment strategies.

Andrei R Akhmetzhanov, Jong Wook Kim, Ryan Sullivan, Robert A Beckman, Pablo Tamayo, Chen-Hsiang Yeang

Abstract read
In one paragraph

Article in Journal of theoretical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Tumour Growth Mechanisms Determine Effectiveness of Adaptive Therapy in Glandular Tumours.Interdisciplinary sciences, computational life sciences · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. How Should Cancer Models Be Constructed?Cancer control : journal of the Moffitt Cancer Center
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Andrei R AkhmetzhanovInstitute of Statistical Science, Academia Sinica, 128 Academia Rd, Sec 2, Nankang, 11529, Taipei, Taiwan; Graduate School of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan.
Jong Wook KimBroad Institute of Harvard & MIT, 450 Main St, Cambridge, MA, 02142, USA; Division of Medical Genetics, School of Medicine, UC San Diego, CA, USA; Moores Cancer Center and Department of Medicine, University of California San Diego, La Jolla, CA, USA.
Ryan SullivanMassachusetts General Hospital & Harvard Medical School, Boston, MA, USA.
Robert A BeckmanDepartments of Oncology and of Biostatistics, Bioinformatics, and Biomathematics, Lombardi Comprehensive Cancer Center and Innovation Center for Biomedical Informatics, Georgetown University Medical Center, Washington, DC, USA.
Pablo TamayoBroad Institute of Harvard & MIT, 450 Main St, Cambridge, MA, 02142, USA; Division of Medical Genetics, School of Medicine, UC San Diego, CA, USA; Moores Cancer Center and Department of Medicine, University of California San Diego, La Jolla, CA, USA.
Chen-Hsiang YeangInstitute of Statistical Science, Academia Sinica, 128 Academia Rd, Sec 2, Nankang, 11529, Taipei, Taiwan. Electronic address: chyeang@stat.sinica.edu.tw.

Funding

A Rational Systematic Approach to Find Combinations of Pharmacologic and Immune Therapies that Target Identifiable Oncogenic StatesU01CA217885 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COHEN, EZRA, KAUFMAN, DAN S. · 2017 to 2021
$5.1M
Next-generation Functional Genetic Screening of Un-screenable TraitsR01HG009285 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MALI, PRASHANT, TAMAYO, PABLO · 2017 to 2020
$4.2M
NCI NIH HHS U01 CA217885NHGRI NIH HHS R01 HG009285
6 · The paper itself

Abstract

Despite recent advances in targeted drugs and immunotherapy, cancer remains "the emperor of all maladies" due to almost inevitable emergence of resistance. Drug resistance is thought to be driven by genetic alterations and/or dynamic plasticity that deregulate pathway activities and regulatory programs of a highly heterogeneous tumour. In this study, we propose a modelling framework to simulate population dynamics of heterogeneous tumour cells with reversible drug resistance. Drug sensitivity of a tumour cell is determined by its internal states, which are demarcated by coordinated activities of multiple interconnected oncogenic pathways. Transitions between cellular states depend on the effects of targeted drugs and regulatory relations between the pathways. Under this framework, we build a simple model to capture drug resistance characteristics of BRAF-mutant melanoma, where two cell states are determined by two mutually inhibitory - main and alternative - pathways. We assume that cells with an activated main pathway are proliferative yet sensitive to the BRAF inhibitor, and cells with an activated alternative pathway are quiescent but resistant to the drug. We describe a dynamical process of tumour growth under various drug regimens using the explicit solutions of mean-field equations. Based on these solutions, we compare efficacy of three treatment strategies from simulated data: static treatments with continuous and constant dosages, periodic treatments with regular intermittent active phases and drug holidays, and treatments derived from optimal control theory (OCT). Periodic treatments outperform static treatments with a considerable margin, while treatments based on OCT outperform the best periodic treatment. Our results provide insights regarding optimal cancer treatment modalities for heterogeneous tumours, and may guide the development of optimal therapeutic strategies to circumvent plastic drug resistance. They can also be used to evaluate the efficacy of suboptimal treatments that may account for side effects of the treatment and the cost of its application.

Indexed as

Drug Resistance, NeoplasmMelanomaModels, BiologicalMutationProto-Oncogene Proteins B-rafHumansProtein Kinase InhibitorsBRAF protein, humanProtein Kinase InhibitorsProto-Oncogene Proteins B-rafDrug resistanceOncogenic statesPathway regulationState transitionsTargeted treatmentsTumour management

Identifiers

PMID31077681
PMCPMC9534689

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.