ArticleBioinformatics (Oxford, England)2019
SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal.
Article in Bioinformatics (Oxford, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Local increases in admixture with hunter-gatherers followed the initial expansion of Neolithic farmers across continental Europe.Science advances · 2025Article
- The genomic footprints of migration: how ancient DNA reveals our history of mobility.Genome biology · 2025Review
- Past human expansions shaped the spatial pattern of Neanderthal ancestry.Science advances · 2023Article
- Article
- Using gridCoal to assess whether standard population genetic theory holds in the presence of spatio-temporal heterogeneity in population size.Molecular ecology resources · 2022Article
- Article
- Simulated patterns of mitochondrial diversity are consistent with partial population turnover in Bronze Age Central Europe.American journal of biological anthropology · 2022Article
- Addressing alpine plant phylogeography using integrative distributional, demographic and coalescent modeling.Alpine botany · 2022Review
- Earlier than expected introductions of theEcology and evolution · 2022Article
- Article
- Spatially explicit paleogenomic simulations support cohabitation with limited admixture between Bronze Age Central European populations.Communications biology · 2021Article
- The evolutionary dynamics of biological invasions: A multi-approach perspective.Evolutionary applications · 2021Review
- Evaluating Causes of Current Genetic Gradients of Modern Humans of the Iberian Peninsula.Genome biology and evolution · 2021Article
- Projecting introgression from domestic cats into European wildcats in the Swiss Jura.Evolutionary applications · 2020Article
- Harnessing paleo-environmental modeling and genetic data to predict intraspecific genetic structure.Evolutionary applications · 2020Article
- Variable outcomes of hybridization between decliningEvolutionary applications · 2020Article
- An explicit test of Pleistocene survival in peripheral versus nunatak refugia in two high mountain plant species.Molecular ecology · 2020Article
- Rates and Rocks: Strengths and Weaknesses of Molecular Dating Methods.Frontiers in genetics · 2020Article
- Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
summarySPLATCHE3 simulates genetic data under a variety of spatially explicit evolutionary scenarios, extending previous versions of the framework. The new capabilities include long-distance migration, spatially and temporally heterogeneous short-scale migrations, alternative hybridization models, simulation of serial samples of genetic data and a large variety of DNA mutation models. These implementations have been applied independently to various studies, but grouped together in the current version. AVAILABILITY AND IMPLEMENTATION: SPLATCHE3 is written in C++ and is freely available for non-commercial use from the website http://www.splatche.com/splatche3. It includes console versions for Linux, MacOs and Windows and a user-friendly GUI for Windows, as well as detailed documentation and ready-to-use examples.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.