Evidence map›Paper›PMID 31077108›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2019

Picturing Polarized Myeloid Phagocytes and Regulatory Cells by Mass Cytometry.

Mikael Roussel, Todd Bartkowiak, Jonathan M Irish

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Mikael RousselUniv Rennes, CHU Rennes, Inserm, MICMAC [(MIcroenvironment, Cell differentiation, iMmunology And Cancer)]-UMR_S 1236, EFS, Rennes, France. mikael.roussel@chu-rennes.fr.
Todd BartkowiakDepartment of Pathology, Microbiology and Immunology and Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA.
Jonathan M IrishDepartment of Pathology, Microbiology and Immunology and Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA. jonathan.irish@vanderbilt.edu.

Funding

Single-Cell Biology and Data Analysis Shared Resource (SCB-DA SR)U54CA217450 · NCI · VANDERBILT UNIVERSITY · PI WEAVER, ALISSA M · 2018 to 2022
$8.5M
Single Cell Methods for Bioeffector Discovery and AnalysisR01CA226833 · NCI · VANDERBILT UNIVERSITY · PI BRIAN O BACHMANN, Jonathan Michael Irish · 2019 to 2026
$6.1M
Memory potential, molecular characterization, and translational applications of the novel ThEO/TcEO T cell phenotypeK00CA212447 · NCI · VANDERBILT UNIVERSITY · PI BARTKOWIAK, TODD · 2018 to 2021
$309k
NCI NIH HHS K00 CA212447NCI NIH HHS R01 CA226833NCI NIH HHS U54 CA217450
6 · The paper itself

Abstract

The immune monocyte/phagocyte system (MPS) includes numerous cell subsets of the myeloid lineage including monocyte, macrophage, and dendritic cell (DC) populations that are heterogeneous both phenotypically and functionally. Previously, we characterized these diverse MPS phenotypes with multi-parametric mass cytometry (CyTOF). In order to expansively characterize monocytes, macrophages, and dendritic cells, a CyTOF panel was designed to measure 35 identity-, activation-, and polarization-markers. Here we provide a protocol to define a reference map for the myeloid compartment, including sample preparation, to produce reference cell subsets from the monocyte/phagocyte system. In particular, we focused on monocyte-derived macrophages that were further polarized in vitro with cytokine stimulation (i.e., M-CSF, GM-CSF, IL-4, IL-10, IFNγ, and LPS), as well as monocyte-derived DCs, and myeloid-derived suppressor cells (MDSCs), generated in vitro from human bone marrow and/or peripheral blood.

Indexed as

CytokinesDendritic CellsFlow CytometryHumansMass SpectrometryMonocytesMyeloid-Derived Suppressor CellsPhagocytesPhenotypeSingle-Cell AnalysisCytokinesDendritic cellsMacrophage polarizationMass cytometryMyeloid-derived suppressor cellsMyeloid regulatory cells

Identifiers

PMID31077108
PMCPMC6886519

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.