Evidence map›Paper›PMID 31076580›Full record

ArticleScientific reports2019

Melanoma proteomics suggests functional differences related to mutational status.

Lucía Trilla-Fuertes, Angelo Gámez-Pozo, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Mariana Díaz-Almirón, Claudia Fortes, María Ferrer-Gómez, Rocío López-Vacas, Verónica Parra Blanco, Iván Márquez-Rodas and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Lucía Trilla-FuertesBiomedica Molecular Medicine SL, Madrid, Spain.
Angelo Gámez-PozoBiomedica Molecular Medicine SL, Madrid, Spain.
Guillermo Prado-VázquezBiomedica Molecular Medicine SL, Madrid, Spain.
Andrea Zapater-MorosBiomedica Molecular Medicine SL, Madrid, Spain.ORCID http://orcid.org/0000-0002-9675-0783
Mariana Díaz-AlmirónBiostatistics Unit, Hospital Universitario La Paz-IdiPAZ, Madrid, Spain.
Claudia FortesFunctional Genomics Center Zurich, University of Zurich/ETH Zurich, Zurich, Switzerland.
María Ferrer-GómezMolecular Oncology & Pathology Lab, Institute of Medical and Molecular Genetics-INGEMM, Hospital Universitario La Paz-IdiPAZ, Madrid, Spain.
Rocío López-VacasMolecular Oncology & Pathology Lab, Institute of Medical and Molecular Genetics-INGEMM, Hospital Universitario La Paz-IdiPAZ, Madrid, Spain.
Verónica Parra BlancoServicio de Anatomía Patológica, Hospital Universitario Gregorio Marañón, Madrid, Spain.
Iván Márquez-RodasServicio de Oncología Médica, Hospital Universitario Gregorio Marañón, Madrid, Spain.
Ainara SoriaServicio de Oncología Médica, Hospital Universitario Ramón y Cajal, Madrid, Spain.
Juan Ángel Fresno VaraMolecular Oncology & Pathology Lab, Institute of Medical and Molecular Genetics-INGEMM, Hospital Universitario La Paz-IdiPAZ, Madrid, Spain. juanangel.fresno@salud.madrid.org.ORCID http://orcid.org/0000-0003-1527-1252
Enrique EspinosaServicio de Oncología Médica, Hospital Universitario La Paz-IdiPAZ, Madrid, Spain. eespinosa00@hotmail.com.
Hospital Universitario La Paz · ESHospital General Universitario Gregorio Marañón · ESHospital Universitario Ramón y Cajal · ESInstituto de Salud Carlos III · ESUniversity of Zurich · CH

Funding

A Health IT based Psychoeducational Intervention for African American Prostate CancerR01MD007783 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI RIVERS, BRIAN M. · 2014 to 2019
$1.8M
NIMHD NIH HHS R01 MD007783
6 · The paper itself

Abstract

Melanoma is the most lethal cutaneous cancer. New drugs have recently appeared; however, not all patients obtain a benefit of these new drugs. For this reason, it is still necessary to characterize melanoma at molecular level. The aim of this study was to explore the molecular differences between melanoma tumor subtypes, based on BRAF and NRAS mutational status. Fourteen formalin-fixed, paraffin-embedded melanoma samples were analyzed using a high-throughput proteomics approach, combined with probabilistic graphical models and Flux Balance Analysis, to characterize these differences. Proteomics analyses showed differences in expression of proteins related with fatty acid metabolism, melanogenesis and extracellular space between BRAF mutated and BRAF non-mutated melanoma tumors. Additionally, probabilistic graphical models showed differences between melanoma subgroups at biological processes such as melanogenesis or metabolism. On the other hand, Flux Balance Analysis predicts a higher tumor growth rate in BRAF mutated melanoma samples. In conclusion, differential biological processes between melanomas showing a specific mutational status can be detected using combined proteomics and computational approaches.

Indexed as

Chromatography, High Pressure LiquidGTP PhosphohydrolasesHumansMass SpectrometryMelanomaMembrane ProteinsMetabolic Flux AnalysisMutationProteomicsProto-Oncogene Proteins B-rafSkin NeoplasmsGTP PhosphohydrolasesMembrane ProteinsNRAS protein, humanProto-Oncogene Proteins B-raf

Identifiers

PMID31076580
PMCPMC6510784
OpenAlexW2943995046

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.